@article {5243,
	title = {Local RNA structure alignment with incomplete sequence.},
	journal = {Bioinformatics},
	volume = {25},
	year = {2009},
	month = {2009 May 15},
	pages = {1236-43},
	abstract = {<p>Accuracy of automated structural RNA alignment is improved by using models that consider not only primary sequence but also secondary structure information. However, current RNA structural alignment approaches tend to perform poorly on incomplete sequence fragments, such as single reads from metagenomic environmental surveys, because nucleotides that are expected to be base paired are missing.</p>
},
	keywords = {Algorithms, Databases, Genetic, Models, Molecular, Nucleic Acid Conformation, RNA, Sequence Alignment, Sequence Analysis},
	issn = {1367-4811},
	doi = {10.1093/bioinformatics/btp154},
	author = {Kolbe, Diana L and Eddy, Sean R.}
}
