@article {69347, title = {A tunable and versatile chemogenetic near infrared fluorescent reporter}, journal = {Nat Commun}, year = {2025}, month = {2025 Mar 16}, abstract = {

Near-infrared (NIR) fluorescent reporters open interesting perspectives for multiplexed imaging with higher contrast and depth using less toxic light. Here, we propose nirFAST, a small (14 kDa) chemogenetic NIR fluorescent reporter, displaying higher cellular brightness compared to top-performing NIR fluorescent proteins. nirFAST binds and stabilizes the fluorescent state of synthetic cell permeant fluorogenic chromophores (so-called fluorogens), otherwise dark when free. nirFAST displays tunable NIR, far-red or red emission through change of fluorogen. nirFAST allows imaging and spectral multiplexing in live cultured mammalian cells, chicken embryo tissues and zebrafish larvae. Its suitability for stimulated emission depletion nanoscopy enabled protein imaging with subdiffraction resolution in live cells. nirFAST enabled the design of a two-color cell cycle indicator for monitoring the different phases of the cell cycle. Finally, bisection of nirFAST allowed the design of a chemically induced dimerization technology with NIR fluorescence readout, enabling the control and visualization of protein proximity.

bioRxiv preprint:\ https://doi.org/10.1101/2024.04.05.588310

}, doi = {10.1038/s41467-025-58017-9}, url = {https://doi.org/10.1038/s41467-025-58017-9}, author = {Lina El Hajji and Benjamin Bunel and Octave Joliot and Chenge Li and Alison G. Tebo and Christine Rampon and Michel Volovitch and Evelyne Fischer and Nicolas Pietrancosta and Franck Perez and Xavier Morin and Sophie Vriz and Arnaud Gautier} } @article {69044, title = {Blue-shifted genetically encoded Ca2+ indicator with enhanced two-photon absorption}, journal = {Neurophotonics}, year = {2024}, month = {2024 Apr 11}, abstract = {

Significance:\ Genetically encoded calcium ion (Ca2+) indicators (GECIs) are powerful tools for monitoring intracellular\ Ca2+\ concentration changes in living cells and model organisms. In particular, GECIs have found particular utility for monitoring the transient increase of\ Ca2+concentration that is associated with the neuronal action potential. However, the palette of highly optimized GECIs for imaging of neuronal activity remains relatively limited. Expanding the selection of available GECIs to include new colors and distinct photophysical properties could create new opportunities for\ in vitro\ and\ in vivo\ fluorescence imaging of neuronal activity. In particular, blue-shifted variants of GECIs are expected to have enhanced two-photon brightness, which would facilitate multiphoton microscopy.

Aim:\ We describe the development and applications of T-GECO1-a high-performance blue-shifted GECI based on the\ Clavularia sp.-derived mTFP1.

Approach:\ We use protein engineering and extensive directed evolution to develop T-GECO1. We characterize the purified protein and assess its performance\ in vitro\ using one-photon excitation in cultured rat hippocampal neurons,\ in vivo\ using one-photon excitation fiber photometry in mice, and\ ex vivo\ using two-photon\ Ca2+\ imaging in hippocampal slices.

Results:\ The\ Ca2+-bound state of T-GECO1 has an excitation peak maximum of 468 nm, an emission peak maximum of 500 nm, an extinction coefficient of\ 49,300M-1cm-1, a quantum yield of 0.83, and two-photon brightness approximately double that of EGFP. The\ Ca2+-dependent fluorescence increase is 15-fold, and the apparent\ Kd\ for\ Ca2+\ is 82 nM. With two-photon excitation conditions at 850 nm, T-GECO1 consistently enabled the detection of action potentials with higher signal-to-noise (SNR) than a late generation GCaMP variant.

Conclusions:\ T-GECO1 is a high-performance blue-shifted GECI that, under two-photon excitation conditions, provides advantages relative to late generation GCaMP variants.

Keywords:\ blue-shifted fluorescence; genetically encoded calcium ion indicator; neuronal activity imaging; protein engineering; two-photon excitation.

}, doi = {10.1117/1.NPh.11.2.024207}, url = {https://doi.org/10.1117/1.NPh.11.2.024207}, author = {Abhi Aggarwal and Smrithi Sunil and Imane Bendifallah and Michael Moon and Mikhail Drobizhev and Landon Zarowny and Jihong Zheng and Sheng-Yi Wu and Alexander W. Lohman and Alison G. Tebo and Valentina Emiliani and Kaspar Podgorski and Yi Shen and Robert E. Campbell} } @article {69108, title = {A fluorogenic complementation tool kit for interrogating lipid droplet-organelle interaction}, journal = {J. Cell Biol.}, volume = {223}, year = {2024}, month = {2024 Jul 01}, pages = {e202311126}, abstract = {

Contact sites between lipid droplets and other organelles are essential for cellular lipid and energy homeostasis upon metabolic demands. Detection of these contact sites at the nanometer scale over time in living cells is challenging. We developed a tool kit for detecting contact sites based on fluorogen-activated bimolecular complementation at CONtact sites, FABCON, using a reversible, low-affinity split fluorescent protein, splitFAST. FABCON labels contact sites with minimal perturbation to organelle interaction. Via FABCON, we quantitatively demonstrated that endoplasmic reticulum (ER)- and mitochondria (mito)-lipid droplet contact sites are dynamic foci in distinct metabolic conditions, such as during lipid droplet biogenesis and consumption. An automated analysis pipeline further classified individual contact sites into distinct subgroups based on size, likely reflecting differential regulation and function. Moreover, FABCON is generalizable to visualize a repertoire of organelle contact sites including ER-mito. Altogether, FABCON reveals insights into the dynamic regulation of lipid droplet-organelle contact sites and generates new hypotheses for further mechanistical interrogation during metabolic regulation.

}, doi = {10.1083/jcb.202311126 }, url = {https://doi.org/10.1083/jcb.202311126 }, author = {Xiao Li and Rico Gamuyao and Ming-Lun Wu and Woo Jung Cho and Nathan B. Kurtz and Sharon V. King and R.A. Petersen and Daniel R. Stabley and Caleb Lindow and Leslie Climer and Abbas Shirinifard and Francesca Ferrara and Robert E. Throm and Camenzind G. Robinson and Alex Carisey and Alison G. Tebo and Chi-Lun Chang} } @article {69144, title = {Transforming chemigenetic bimolecular fluorescence complementation systems into chemical dimerizers using chemistry.}, journal = {bioRxiv}, year = {2024}, month = {2024 Jan 01}, abstract = {

Chemigenetic tags are versatile labels for fluorescence microscopy that combine some of the advantages of genetically encoded tags with small molecule fluorophores. The Fluorescence Activating and absorbance Shifting Tags (FASTs) bind a series of highly fluorogenic and cell-permeable chromophores. Furthermore, FASTs can be used in complementation-based systems for detecting or inducing protein-protein interactions, depending on the exact FAST protein variant chosen. In this study, we systematically explore substitution patterns on FAST fluorogens and generate a series of fluorogens that bind to FAST variants, thereby activating their fluorescence. This effort led to the discovery of a novel fluorogen with superior properties, as well as a fluorogen that transforms splitFAST systems into a fluorogenic dimerizer, eliminating the need for additional protein engineering.

}, doi = {10.1101/2023.12.30.573644}, url = {https://doi.org/10.1101/2023.12.30.573644}, author = {Pratik Kumar and Alina Gutu and Amelia Waring and Timothy A. Brown and Luke D. Lavis and Alison G. Tebo} }