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Lee (Tzumin) Lab / Software
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Fiji Cell Counter

Structured process for the manual count of particles (e.g. cell bodies) in 2D and 3D images of any kind with graphical mark-up in the image.

For flexibility reasons this tool was implemented as macro-set for fiji/ImageJ (version 1.47h).

For installation

  • Download and decompress the file behind the download link below,
  • Copy the result into the 'macros' folder of your fiji/ImageJ,
  • Restart fiji/imageJ,
  • Install tool into fiji/imageJ from the menu: Plugins>Macros>Install...

Successful installation will generate two new buttons ('RGB' and '?') in fiji/imageJ.
The '?' button will display more help on the function of the tool.

Author: Arnim Jenett
Feb 2013

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