Papers
(direct access links to paywalled papers)
Stringer C*, Pachitariu M*, Steinmetz N, Reddy CB, Carandini M+, Harris KD+ (2019).
Spontaneous behaviors drive multidimensional, brainwide activity. Science, 364:6437.
abstract, pdf, full text
Code
Suite2p (pipeline for calcium imaging) [github]
Kilosort2 (spike sorting) [github]
Facemap (behavioral analysis) [github]
Rastermap (high-dim visualization) [github]
Datasets
Recordings of ~20,000 neurons from V1 in response to oriented stimuli [figshare]
Eight-probe Neuropixels recordings during spontaneous behaviors [figshare]
Recordings of 10,000 neurons in visual cortex in response to 2,800 natural images [figshare]
Recordings of 10k neurons in V1 during drifting gratings [figshare]
Recordings of ten thousand neurons in visual cortex during spontaneous behaviors [figshare]
Papers with code
Stringer et al, 2019 [github]
Stringer, Pachitariu et al, 2019b [github]
Stringer, Pachitariu et al, 2019a [github]
Pachitariu et al, 2018 [github]