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Pachitariu Lab / Downloads

papers, code, data
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Papers

(direct access links to paywalled papers)

Stringer C*, Pachitariu M*, Steinmetz N, Reddy CB, Carandini M+, Harris KD+ (2019).
Spontaneous behaviors drive multidimensional, brainwide activity. Science, 364:6437.
abstractpdf, full text

Code

Suite2p (pipeline for calcium imaging)  [github]

Kilosort2 (spike sorting) [github]

Facemap (behavioral analysis) [github]

Rastermap (high-dim visualization) [github]

Datasets

Recordings of ~20,000 neurons from V1 in response to oriented stimuli [figshare]

Eight-probe Neuropixels recordings during spontaneous behaviors [figshare]

Recordings of 10,000 neurons in visual cortex in response to 2,800 natural images [figshare]

Recordings of 10k neurons in V1 during drifting gratings [figshare]

Recordings of ten thousand neurons in visual cortex during spontaneous behaviors [figshare]

Papers with code

Stringer et al, 2019 [github]

Stringer, Pachitariu et al, 2019b [github]

Stringer, Pachitariu et al, 2019a [github]

Pachitariu et al, 2018 [github]