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This is a partial list of available data sets and their provenance

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Data

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This is a partial list of available data sets and their provenance

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Data formats

Svobodalab data format

Matlab based data format (http://crcns.org/files/data/alm-1/Svoboda_lab_data_format_general.pdf). Each data set contains additional specifications.

NWB – Neural Data Without Borders

Widely adopted data format for neurophysiology and related data.

https://neurodatawithoutborders.github.io/

NOTE Feb 2019. We are in the process of moving our data to NWB2.0

Binder

Binder is a method to link analysis code and data repositories. Binder is an elegant solution for light-weight projects. Users can readily start interacting with data in Jupyter notebooks.

https://beta.mybinder.org/

Data sets

We attempt to make all data available soon after publication. Bundled with the data are scripts to illustrate use of the data. In some cases complete workflows are documented. Please let us know if something is amiss.

Inagaki et al Nature 2019
Primary repository	Figshare.org
Data DOI	https://doi.org/10.25378/janelia.7489253
Publication	doi: 10.1038/s41586-019-0919-7	published
Format	Svobodalab	competed

Inagaki et al JNS 2018
Primary repository	Figshare.org
Data DOI
Publication	doi: 10.1523/JNEUROSCI.3152-17.2018	published
Format	Svobodalab	competed

Chen et al Neuron 2017 Calcium imaging and electrophysiology in motor cortex, including ALM, in adult mice performing a tactile decision behavior.
Primary repository	http://crcns.org/
Data DOI	10.6080/K0S180F9
Publication	http://dx.doi.org/10.1016/ j.neuron.2017.05.005	published
Format	NWB	in progress

Guo / Inagaki et al et al Nature 2017 Electrophysiology and optogenetics in anterior lateral motor cortex (ALM) neurons and thalamus neurons of adult mice performing a tactile decision behavior.
Primary repository	http://crcns.org/
Data DOI	https://dx.doi.org/10.6080/K03F4MH2
Publication	doi:10.1038/nature22324	published
Format	NWB	in progress

Yu/ Gutnisky et al Nat. Neurosci. 2016 Spikes and membrane potential in the mouse somatosensory thalamocortical system during active tactile behavior.
Primary repository	http://crcns.org/
Data DOI	http://doi.org/10.6080/K0T43R01
Publication	doi: 10.1038/nn.4412	published
Format	NWB	completed

Sofroniew / Flickinger et al eLife 2016 Notebooks and data acquired with the two-photon random access mesoscope (2p-RAM), accompanying ‘A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging’
Primary repository	https://github.com/sofroniewn/2pRAM-paper
Data DOI	NA
Publication	doi: 10.7554/eLife.14472	published
Format	Binder	completed

Li/Daie et al Nature 2016 Electrophysiology and optogenetics in anterior lateral motor cortex (ALM) neurons of adult mice performing a tactile decision behavior
Primary repository	http://crcns.org/data-sets/motor-cortex/alm-3/about-alm-3
Data DOI	http://dx.doi.org/10.6080/K04M92GX
Publication	10.1038/nature17643	published
Format	Svobodalab	completed

Li et al Nature 2015 Extracellular recordings and optogenetics from anterior lateral motor cortex (ALM) neurons of adult mice performing a tactile decision behavior
Primary repository	http://crcns.org/data-sets/motor-cortex/alm-1/about-alm-1
Data DOI	http://dx.doi.org/10.6080/K0MS3QNT
Publication	10.1038/nature14178	published
Format	NWB	completed
Format	Svobodalab	completed

Li et al Nature 2015 Calcium imaging in anterior lateral motor cortex (ALM) neurons of adult mice performing a tactile decision behavior
Primary repository	http://crcns.org/data-sets/motor-cortex/alm-2
Data DOI	http://dx.doi.org/10.6080/K04M92GX
Publication	10.1038/nature14178	published
Format	Svobodalab	completed

Peron et al Neuron 2015 Volumetric calcium imaging data recorded during performance of a single whisker object localization task, sampling activity in the majority of the relevant superficial barrel cortex neurons (75 %, 12,000 neurons per mouse)
Primary repository	http://crcns.org/data-sets/ssc/ssc-2/about-ssc-2
Data DOI	http://dx.doi.org/10.6080/K0TB14TN
Publication	10.1016/j.neuron.2015.03.027	published
Format	NWB	completed
Format	Svobodalab	completed

Sofroniew et al eLife 2015 Data relevant to neural coding in barrel cortex during whisker-guided locomotion
Primary repository	https://github.com/sofroniewn/tactile-coding
Data DOI	NA
Publication	doi: 10.7554/eLife.12559	published

Akerboom et al J. Neurosci. 2012 Chen et al Nature 2013 Simultaneous calcium imaging and loose-seal patch recording . This is calibration data for GCaMP5 and GCaMP6
Primary repository	http://crcns.org/data-sets/methods/cai-1/about-cai-1/?searchterm=svoboda
Data DOI	http://dx.doi.org/10.6080/K02R3PMN
Publications	doi:10.1038/nature12354 doi:10.1523/JNEUROSCI.2601-12.2012	published

Dana et al ELife 2016 Simultaneous calcium imaging and loose-seal patch recording . This is calibration data for jRGECO1a and jRCaMP1a.
Primary repository	http://crcns.org/data-sets/methods/cai-2/about
Data DOI	http://dx.doi.org/10.6080/K0W37T87
Publications	doi:10.7554/eLife.12727	published

Hires, Gutsiky et al Elife 2015. Juxtacellular recordings from primary somatosensory cortex (vS1) neurons of adult mice performing whisker-mediated object localization.
Primary repository	https://crcns.org/data-sets/ssc/ssc-5/about-ssc-5
Data DOI	http://dx.doi.org/10.6080/K0MG7MDV
Publications	doi: 10.7554/eLife.06619	published

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