Data formats
Svobodalab data format
Matlab based data format (http://crcns.org/files/data/alm-1/Svoboda_lab_data_format_general.pdf). Each data set contains additional specifications.
NWB – Neural Data Without Borders
Widely adopted data format for neurophysiology and related data.
https://neurodatawithoutborders.github.io/
NOTE Feb 2019. We are in the process of moving our data to NWB2.0
Binder
Binder is a method to link analysis code and data repositories. Binder is an elegant solution for light-weight projects. Users can readily start interacting with data in Jupyter notebooks.
Data sets
We attempt to make all data available soon after publication. Bundled with the data are scripts to illustrate use of the data. In some cases complete workflows are documented. Please let us know if something is amiss.
Inagaki et al Nature 2019
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Primary repository |
Figshare.org |
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Data DOI |
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Publication |
doi: 10.1038/s41586-019-0919-7
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published |
Format |
Svobodalab |
competed |
Inagaki et al JNS 2018 |
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Primary repository |
Figshare.org |
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Data DOI |
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Publication |
doi: 10.1523/JNEUROSCI.3152-17.2018 |
published |
Format |
Svobodalab |
competed |
Chen et al Neuron 2017 Calcium imaging and electrophysiology in motor cortex, including ALM, in adult mice performing a tactile decision behavior. |
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Primary repository |
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Data DOI |
10.6080/K0S180F9 |
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Publication |
j.neuron.2017.05.005 |
published |
Format |
NWB |
in progress |
Guo / Inagaki et al et al Nature 2017 Electrophysiology and optogenetics in anterior lateral motor cortex (ALM) neurons and thalamus neurons of adult mice performing a tactile decision behavior. |
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Primary repository |
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Data DOI |
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Publication |
doi:10.1038/nature22324 |
published |
Format |
NWB |
in progress |
Yu/ Gutnisky et al Nat. Neurosci. 2016 Spikes and membrane potential in the mouse somatosensory thalamocortical system during active tactile behavior. |
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Primary repository |
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Data DOI |
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Publication |
doi: 10.1038/nn.4412 |
published |
Format |
NWB |
completed |
Sofroniew / Flickinger et al eLife 2016 Notebooks and data acquired with the two-photon random access mesoscope (2p-RAM), accompanying ‘A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging’ |
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Primary repository |
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Data DOI |
NA |
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Publication |
doi: 10.7554/eLife.14472 |
published |
Format |
Binder |
completed |
Li/Daie et al Nature 2016 Electrophysiology and optogenetics in anterior lateral motor cortex (ALM) neurons of adult mice performing a tactile decision behavior |
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Primary repository |
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Data DOI |
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Publication |
published |
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Format |
Svobodalab |
completed |
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Li et al Nature 2015 Extracellular recordings and optogenetics from anterior lateral motor cortex (ALM) neurons of adult mice performing a tactile decision behavior |
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Primary repository |
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Data DOI |
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Publication |
published |
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Format |
NWB |
completed |
Format |
Svobodalab |
completed |
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Li et al Nature 2015 Calcium imaging in anterior lateral motor cortex (ALM) neurons of adult mice performing a tactile decision behavior |
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Primary repository |
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Data DOI |
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Publication |
published |
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Format |
Svobodalab |
completed |
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Peron et al Neuron 2015 Volumetric calcium imaging data recorded during performance of a single whisker object localization task, sampling activity in the majority of the relevant superficial barrel cortex neurons (75 %, 12,000 neurons per mouse) |
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Primary repository |
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Data DOI |
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Publication |
published |
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Format |
NWB |
completed |
Format |
Svobodalab |
completed |
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Sofroniew et al eLife 2015 Data relevant to neural coding in barrel cortex during whisker-guided locomotion |
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Primary repository |
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Data DOI |
NA |
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Publication |
doi: 10.7554/eLife.12559 |
published |
Akerboom et al J. Neurosci. 2012 Chen et al Nature 2013 Simultaneous calcium imaging and loose-seal patch recording . This is calibration data for GCaMP5 and GCaMP6 |
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Primary repository |
http://crcns.org/data-sets/methods/cai-1/about-cai-1/?searchterm=svoboda |
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Data DOI |
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Publications |
published |
Dana et al ELife 2016 Simultaneous calcium imaging and loose-seal patch recording . This is calibration data for jRGECO1a and jRCaMP1a. |
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Primary repository |
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Data DOI |
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Publications |
published |
Hires, Gutsiky et al Elife 2015. Juxtacellular recordings from primary somatosensory cortex (vS1) neurons of adult mice performing whisker-mediated object localization. |
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Primary repository |
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Data DOI |
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Publications |
published |