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This is a partial list of available data sets and their provenance
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Data
node:field_slogan | entity_field
This is a partial list of available data sets and their provenance
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Data formats

Svobodalab data format

Matlab based data format (http://crcns.org/files/data/alm-1/Svoboda_lab_data_format_general.pdf). Each data set contains additional specifications. 

NWB – Neural Data Without Borders

Widely adopted data format for neurophysiology and related data.

https://neurodatawithoutborders.github.io/

Binder

Binder is a method to link analysis code and data repositories. Binder is an elegant solution for light-weight projects. Users can readily start interacting with data in Jupyter notebooks.

https://beta.mybinder.org/

Data sets

We attempt to make all data available soon after publication. Bundled with the data are scripts to illustrate use of the data. In some cases complete workflows are documented. Please let us know if something is amiss.

 

Chen et al Neuron 2017

Calcium imaging and electrophysiology in motor cortex, including ALM, in adult mice performing a tactile decision behavior.

Primary repository

http://crcns.org/

Data DOI

10.6080/K0S180F9

Publication

http://dx.doi.org/10.1016/

j.neuron.2017.05.005

published

Format

NWB

in progress

 

 

 

 

Guo / Inagaki et al et al Nature 2017

Electrophysiology and optogenetics in anterior lateral motor cortex (ALM) neurons and thalamus neurons of adult mice performing a tactile decision behavior.

Primary repository

http://crcns.org/

Data DOI

https://dx.doi.org/10.6080/K03F4MH2

Publication

doi:10.1038/nature22324

published

Format

NWB

in progress

 

 

Yu/ Gutnisky et al Nat. Neurosci. 2016

Spikes and membrane potential in the mouse somatosensory thalamocortical system during active tactile behavior. 

Primary repository

http://crcns.org/

Data DOI

 http://doi.org/10.6080/K0T43R01

Publication

doi: 10.1038/nn.4412

published

Format

NWB

completed

 


 

Sofroniew / Flickinger et al eLife 2016

Notebooks and data acquired with the two-photon random access mesoscope (2p-RAM), accompanying ‘A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging’

Primary repository

https://github.com/sofroniewn/2pRAM-paper

Data DOI

NA

Publication

doi: 10.7554/eLife.14472

published

Format

Binder

completed

 

 

 Li/Daie et al Nature 2016

Electrophysiology and optogenetics in anterior lateral motor cortex (ALM) neurons of adult mice performing a tactile decision behavior

Primary repository

http://crcns.org/data-sets/motor-cortex/alm-3/about-alm-3

Data DOI

http://dx.doi.org/10.6080/K04M92GX

Publication

10.1038/nature17643 

published

Format

Svobodalab

completed

 

 

 

 

 Li et al Nature 2015

Extracellular recordings and optogenetics from anterior lateral motor cortex (ALM) neurons of adult mice performing a tactile decision behavior

Primary repository

http://crcns.org/data-sets/motor-cortex/alm-1/about-alm-1

Data DOI

http://dx.doi.org/10.6080/K0MS3QNT

Publication

 10.1038/nature14178

published

Format

NWB

completed

Format

Svobodalab

completed

 

 

 

 

Li et al Nature 2015

Calcium imaging in anterior lateral motor cortex (ALM) neurons of adult mice performing a tactile decision behavior

Primary repository

http://crcns.org/data-sets/motor-cortex/alm-2

Data DOI

http://dx.doi.org/10.6080/K04M92GX

Publication

10.1038/nature14178

published

Format

Svobodalab

completed

 

 

 

 

Peron et al Neuron 2015

Volumetric calcium imaging data recorded during performance of a single whisker object localization task, sampling activity in the majority of the relevant superficial barrel cortex neurons (75 %, 12,000 neurons per mouse) 

Primary repository

http://crcns.org/data-sets/ssc/ssc-2/about-ssc-2

Data DOI

http://dx.doi.org/10.6080/K0TB14TN

Publication

10.1016/j.neuron.2015.03.027

published

Format

NWB

completed

Format

Svobodalab

completed

 

 

 

 

Sofroniew et al eLife 2015

Data relevant to neural coding in barrel cortex during whisker-guided locomotion 

Primary repository

https://github.com/sofroniewn/tactile-coding

Data DOI

NA

Publication

doi: 10.7554/eLife.12559

published

 

Akerboom et al J. Neurosci. 2012

Chen et al Nature 2013

Simultaneous calcium imaging and loose-seal patch recording . This is calibration data for GCaMP5 and GCaMP6

Primary repository

http://crcns.org/data-sets/methods/cai-1/about-cai-1/?searchterm=svoboda

Data DOI

http://dx.doi.org/10.6080/K02R3PMN

Publications

doi:10.1038/nature12354

doi:10.1523/JNEUROSCI.2601-12.2012

published

 

 

Dana et al ELife 2016

Simultaneous calcium imaging and loose-seal patch recording . This is calibration data for jRGECO1a and jRCaMP1a.

Primary repository

http://crcns.org/data-sets/methods/cai-2/about

Data DOI

http://dx.doi.org/10.6080/K0W37T87

Publications

doi:10.7554/eLife.12727

published

 

 

 

Hires, Gutsiky et al Elife 2015.

Juxtacellular recordings from primary somatosensory cortex (vS1) neurons of adult mice performing whisker-mediated object localization.

Primary repository

https://crcns.org/data-sets/ssc/ssc-5/about-ssc-5

Data DOI

http://dx.doi.org/10.6080/K0MG7MDV

Publications

doi: 10.7554/eLife.06619

published

 

 

Guo / Inagaki et al et al Nature 2017

Electrophysiology and optogenetics in anterior lateral motor cortex (ALM) neurons and thalamus neurons of adult mice performing a tactile decision behavior.

Primary repository

http://crcns.org/

Data DOI

https://dx.doi.org/10.6080/K03F4MH2

Publication

doi:10.1038/nature22324

published

Format

NWB

in progress