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Whisk - Whisker Tracking

Open Science
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Software
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Whisk - Whisker Tracking

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Software for Automated Segmentation and Tracking of Mouse Whiskers from High-speed Video

Whisk is a cross-platform package for fully automated tracking of single rows of whiskers in the high-speed video. It consists of a set of command-line utilities and a graphical interface for semi-automated tracking. Python and Matlab interfaces are also provided. Whisk can read StreamPix SEQ and TIFF as well as any video format that FFMPEG can decode.

Citation:

If this software is useful to you, we'd appreciate it if you cited our paper.

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Screenshot of ui2.py looking at the result after Step 4. Identified whiskers are labelled red, green, and blue. Light yellow indicates a "non-whisker" trace. The green ball identifies the follicle of the selected whisker.
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Publication

Automated Tracking of Whiskers in Videos of Head Fixed Rodents
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Janelia Collaborators

Svoboda Lab
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Contact

Michael Perham
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