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Software

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We offer several image visualization, processing, and analysis packages that run on high-performance workstations. Please contact us for assistance or to install additional software.
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Software
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We offer several image visualization, processing, and analysis packages that run on high-performance workstations. Please contact us for assistance or to install additional software.
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Janelia ImageJ Macros

Intensity Modulated Display:  IMD.zip

Manufacturer Viewers

Zeiss: Zen Lite.

Nikon: Elements Viewer.

Pannoramic: Pannoramic Viewer.

NanoZoomer: NanoZoomer Viewer.

ImageJ

A free and open source Java application that is the best and most versatile general image processing software available. Fully supported. Download.

FIJI

An extended version of ImageJ with many 3rd party plugins pre-installed. Fully supported. Download.

Cell Profiler

A free and open source Python application developed to facilitate high content image analysis without knowledge of how to program. Fully supported. Download

BioImageXD

A free and open source C++ application for attractive visual display of 3D and 4D image datasets. Partially supported. Download.

FluoRender

A free application for attractive visual display of 3D and 4D image datasets. Also supports advanced 3D segmentation. Partially supported. Download.

Adobe Photoshop CS5

Useful for assembling figures and graphics. Fully supported.

Nikon Element Analysis

User-friendly general image processing program with some 3D analysis capabilities as well. Good 3D/4D visualization. Fully supported.