Main Menu (Mobile)- Block

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Software

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We offer several image visualization, processing, and analysis packages that run on high-performance workstations. Please contact us for assistance or to install additional software.
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Software
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We offer several image visualization, processing, and analysis packages that run on high-performance workstations. Please contact us for assistance or to install additional software.
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Manufacturer Viewers

Manufacturer processing and analysis software

  • Zen blue and Zen black.
    • User-friendly general image processing program
    • Airyscan processing
    • Spectral Unmixingczi files batch processing
  • Nikon Element Analysis.
    • User-friendly general image processing program
    • Good 3D/4D visualization
    • High Content Analysis (HCA)
  • TissueGnostics: StrataQuest Analysis Software.
    • TissueGnostics image processing solution for both brightfield and fluorescence images
    • Quantitative cytometric analyses across entire slides
    • Integrates detected objects into context-based quantitative analysis

ImageJ/FIJI

ImageJ is a free and open source Java application that is the best and most versatile general image processing software available. Download ImageJ

FIJI is an extended version of ImageJ with many 3rd party plugins pre-installed and auto-update. Download FIJI

Janelia ImageJ Macros

Intensity Modulated Display: IMD.zip

Additional free applications

  • Cell Profiler: open source Python application developed to facilitate high content image analysis without knowledge of how to program. Download
  • BioImageXD: open source C++ application for attractive visual display of 3D and 4D image datasets. Download
  • FluoRender: application for attractive visual display of 3D and 4D image datasets. Also supports advanced 3D segmentation. Download