Janelia ImageJ Macros
Intensity Modulated Display: IMD.zip
Zeiss: Zen Lite.
Nikon: Elements Viewer.
Pannoramic: Pannoramic Viewer.
NanoZoomer: NanoZoomer Viewer.
A free and open source Java application that is the best and most versatile general image processing software available. Fully supported. Download.
An extended version of ImageJ with many 3rd party plugins pre-installed. Fully supported. Download.
A free and open source Python application developed to facilitate high content image analysis without knowledge of how to program. Fully supported. Download
A free and open source C++ application for attractive visual display of 3D and 4D image datasets. Partially supported. Download.
A free application for attractive visual display of 3D and 4D image datasets. Also supports advanced 3D segmentation. Partially supported. Download.
Adobe Photoshop CS5
Useful for assembling figures and graphics. Fully supported.
Nikon Element Analysis
User-friendly general image processing program with some 3D analysis capabilities as well. Good 3D/4D visualization. Fully supported.