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2024
Rehman A, Zhovmer A, Sato R, Mukouyama Y-S, Chen J, Rissone A, Puertollano R, Liu J, Vishwasrao HD, Shroff H et al..  2024.  Convolutional neural network transformer (CNNT) for fluorescence microscopy image denoising with improved generalization and fast adaptation.. Sci Rep. 14(1):18184.
Bondy AG, Charlton JA, Luo TZhihao, Kopec CD, Stagnaro WM, Venditto SJo C, Lynch L, Janarthanan S, Oline SN, Harris TD et al..  2024.  Coordinated cross-brain activity during accumulation of sensory evidence and decision commitment. bioRxiv.
van der Goes M-SH, Voigts J, Newman JP, Toloza EHS, Brown NJ, Murugan P, Harnett MT.  2024.  Coordinated head direction representations in mouse anterodorsal thalamic nucleus and retrosplenial cortex.. Elife. 13
Liao Y-C, Pang S, Li W-P, Shtengel G, Choi H, Schaefer K, C Xu S, Lippincott-Schwartz J.  2024.  COPII with ALG2 and ESCRTs control lysosome-dependent microautophagy of ER exit sites.. Dev Cell.
Daugird TA, Shi Y, Holland KL, Rostamian H, Liu Z, Lavis LD, Rodriguez J, Strahl BD, Legant WR.  2024.  Correlative single molecule lattice light sheet imaging reveals the dynamic relationship between nucleosomes and the local chromatin environment.. Nat. Commun..
Jradi FM, English BP, Brown TA, Aaron J, Khuon S, Galbraith JA, Galbraith CG, Lavis LD.  2024.  Coumarin as a general switching auxiliary to prepare photochromic and spontaneously blinking fluorophores. bioRxiv.
Yang L-Z, Min Y-H, Liu Y-X, Gao B-Q, Liu X-Q, Huang Y, Wang H, Yang L, Liu ZJ, Chen L-L.  2024.  CRISPR-array-mediated imaging of non-repetitive and multiplex genomic loci in living cells.. Nat Methods.
Matsui A, Spangler C, Elferich J, Shiozaki M, Jean N, Zhao X, Qin M, Zhong H, Yu Z, Gouaux E.  2024.  Cryo-electron tomographic investigation of native hippocampal glutamatergic synapses. eLife.
Wang Z, Wang W, Liu S, Yang F, Liu X, Hua S, Zhu L, Xu A, Hill DL, Wang D et al..  2024.  CSPP1 stabilizes microtubules by capping both plus and minus ends.. Journal of Molecular Cell Biology.
Jasper LA, Wang MC.  2024.  Cutting through stress.. Nature Metabolism.
Patton W, Rhoades JL, Zouinkhi M, Ackerman DG, Malin-Mayor C, Adjavon D, Heinrich L, Bennett D, Zubov Y, Team CMProject et al..  2024.  DaCapo: a modular deep learning framework for scalable 3D image segmentation. arXiv.
Ackerman D, Avetissian E, Bleck CKE, Bogovic JA, Innerberger M, Korff W, Li W-P, Lu Z, Petruncio A, Preibisch S et al..  2024.  Data Release: High-Resolution Imaging and Segmentation of P7 Mouse Tissue Microarchitecture Using FIB-SEM and Machine Learning. bioRxiv.
Zocchi D, Nguyen M, Marquez-Legorreta E, Siwanowicz I, Singh C, Prober DA, Hillman EMC, Ahrens MB.  2024.  Days-old zebrafish rapidly learn to recognize threatening agents through noradrenergic and forebrain circuits.. Curr Biol.
Allier C, Schneider MC, Innerberger M, Heinrich L, Bogovic JA, Saalfeld S.  2024.  Decomposing heterogeneous dynamical systems with graph neural networks. arXiv.
Park P, J. Wong-Campos D, Itkis D, Lee BHun, Qi Y, Davis HC, Grimm JB, Plutkis SE, Lavis L, Cohen AEzra.  2024.  Dendritic voltage imaging maps the biophysical basis of plateau potentials in the hippocampus. bioRxiv.
Sabarís G, Ortíz DM, Laiker I, Mayansky I, Naik S, Cavalli G, Stern DL, Ben Noon EPreger-, Frankel N.  2024.  The density of regulatory information is a major determinant of evolutionary constraint on non-coding DNA in Drosophila. Molecular Biology and Evolution. 41(2):msae004.
Bailly R, Malfante M, Allier C, Paviolo C, Ghenim L, Padmanabhan K, Bardin S, Mars J.  2024.  Detecting abnormal cell behaviors from dry mass time series. Scientific Reports. 14(1)
Yu X, Lu D, Qi X, Lin H, Holloman BL, Jin F, Xu L, Ding L, Peng W, Wang MC et al..  2024.  Development of a First-in-Class RIPK1 Degrader to Enhance Antitumor Immunity. Nat Commun. 15(1):10683.
Vickers P, Adamo L, Alfano M, Clark C, Cresto E, Cui H, Dang H, Dellsén F, Dupin N, Gradowski L et al..  2024.  Development of a novel methodology for ascertaining scientific opinion and extent of agreement.. PLoS One. 19(12):e0313541.
Phan TV, Mattingly HH, Vo L, Marvin JS, Looger LL, Emonet T.  2024.  Direct measurement of dynamic attractant gradients reveals breakdown of the Patlak-Keller-Segel chemotaxis model. Proceedings of the National Academy of Sciences.
Team TMouseLight, Ferreira TA, Eddison M, Copeland M, Lay M, Tenshaw E, Weldon M, Schauder D, Olbris DJ, Rokicki K et al..  2024.  Discovery of neuronal cell types by pairing whole cell reconstructions with RNA expression profiles. bioRxiv.
Beltrán FA, L LTorres-Dí, Troncoso-Escudero P, Villalobos-González J, Mayorga-Weber G, Lara M, Covarrubias-Pinto A, Valdivia S, Vicencio I, Papic E et al..  2024.  Distinct roles of ascorbic acid in extracellular vesicles and free form: Implications for metabolism and oxidative stress in presymptomatic Huntington's disease.. Free Radic Biol Med. 227:521-535.
Jacob LPL, Bailes SM, Williams SD, Stringer C, Lewis LD.  2024.  Distributed fMRI dynamics predict distinct EEG rhythms across sleep and wakefulness.. bioRxiv.
Chou HTing, Valencia F, Alexander JC, Bell ADavis, Deb D, Pollard DA, Paaby AB.  2024.  Diversification of small RNA pathways underlies germline RNA interference incompetence in wild Caenorhabditis elegans strains.. Genetics. 226(1)
Shiu PK, Sterne GR, Spiller N, Franconville R, Sandoval A, Zhou J, Simha N, Kang CHyuk, Yu S, Kim JS et al..  2024.  A Drosophila computational brain model reveals sensorimotor processing.. Nature. 634(8032):210-219.