Biblio

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2019
Ioannou MS, Jackson J, Sheu S-H, Chang C-L, Weigel AV, Liu H, H Pasolli A, C Xu S, Pang S, Matthies D et al..  2019.  Neuron-astrocyte metabolic coupling protects against activity-induced fatty acid toxicity.. Cell. 177(6):1522-1535.e14.
Ioannou MS, Liu Z, Lippincott-Schwartz J.  2019.  A neuron-glia Co-culture system for studying intercellular lipid transport.. Curr Protoc Cell Biol. 84(1):e95.
Cai D, Feliciano D, Dong P, Flores E, Gruebele M, Porat-Shliom N, Sukenik S, Liu Z, Lippincott-Schwartz J.  2019.  Phase separation of YAP reorganizes genome topology for long-term YAP target gene expression.. Nature Cell Biology. 21(12):1578-1589.
2018
Chong S, Dugast-Darzacq C, Liu Z, Dong P, Dailey GM, Cattoglio C, Heckert A, Banala S, Lavis L, Darzacq X et al..  2018.  Imaging dynamic and selective low-complexity domain interactions that control gene transcription.. Science (New York, N.Y.). 361(6400):eaar2555.
Liu Z, Tjian R.  2018.  Visualizing transcription factor dynamics in living cells.. The Journal of Cell Biology. 217(4):1181-91.
2017
Xie L, Torigoe SE, Xiao J, Mai DH, Li L, Davis FP, Dong P, Marie-Nelly H, Grimm J, Lavis L et al..  2017.  A dynamic interplay of enhancer elements regulates Klf4 expression in naïve pluripotency.. Genes & Development. 31(17):1795-1808.
Kieffer-Kwon K-R, Nimura K, Rao SSP, Xu J, Jung S, Pekowska A, Dose M, Stevens E, Mathe E, Dong P et al..  2017.  Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation.. Molecular Cell. 67(4):566-78.
Dong P, Liu Z.  2017.  Shaping development by stochasticity and dynamics in gene regulation.. Open Biology. 7(5)
Liu H, Dong P, Ioannou MS, Li L, Shea J, H Pasolli A, Grimm JB, Rivlin PK, Lavis LD, Koyama M et al..  2017.  Stochastic protein labeling enables long-term single molecule observation in vivo.. bioRxiv.
Liu H, Dong P, Ioannou MS, Li L, Shea J, H Pasolli A, Grimm JB, Rivlin PK, Lavis LD, Koyama M et al..  2017.  Visualizing long-term single-molecule dynamics in vivo by stochastic protein labeling.. Proceedings of the National Academy of Sciences of the United States of America. 115(2):343-8.
2016
Lavis LD, Grimm JB, English BP, Choi H, Muthusamy AK, Mehl BP, Dong P, Brown TA, Lippincott-Schwartz J, Liu Z et al..  2016.  Bright photoactivatable fluorophores for single-molecule imaging.. Nature Methods. 13(12):985-8.
Liu Z, Keller PJ.  2016.  Emerging imaging and genomic tools for developmental systems biology.. Developmental Cell. 36(6):597-610.
Li L, Liu H, Dong P, Li D, Legant WR, Grimm JB, Lavis LD, Betzig E, Tjian R, Liu Z.  2016.  Real-time imaging of Huntingtin aggregates diverting target search and gene transcription.. eLife. 5
2015
Knight SC, Xie L, Deng W, Guglielmi B, Witkowsky LB, Bosanac L, Zhang ET, Beheiry MEl, Masson J-B, Dahan M et al..  2015.  Dynamics of CRISPR-Cas9 genome interrogation in living cells.. Science (New York, N.Y.). 350(6262):823-6.
Liu Z, Lavis LD, Betzig E.  2015.  Imaging live-cell dynamics and structure at the single-molecule level.. Molecular Cell. 58(4):644-59.
Coleman RA, Liu Z, Darzacq X, Tjian R, Singer RH, Lionnet T.  2015.  Imaging transcription: past, present, and future.. Cold Spring Harbor Symposia on Quantitative Biology. 80:1-8.
Liu Z.  2015.  Lighting up genes in single cells at scale.. Cell. 162(4):705-7.
Li L, Martinez SSanchez, Hu W, Liu Z, Tjian R.  2015.  A specific E3 ligase/deubiquitinase pair modulates TBP protein levels during muscle differentiation.. eLife. 4
2014
Liu Z, Legant WR, Chen B-C, Li L, Grimm JB, Lavis LD, Betzig E, Tjian R.  2014.  3D imaging of Sox2 enhancer clusters in embryonic stem cells.. eLife. 3
Lolas M, Valenzuela PDT, Tjian R, Liu Z.  2014.  Charting Brachyury-mediated developmental pathways during early mouse embryogenesis.. Proceedings of the National Academy of Sciences of the United States of America. 111(12):4478-83.
Chen B-C, Legant WR, Wang K, Shao L, Milkie DE, Davidson MW, Janetopoulos C, Wu XS, Hammer JA, Liu Z et al..  2014.  Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution.. Science. 346(6208):1257998.
Chen J, Zhang Z, Li L, Chen B-C, Revyakin A, Hajj B, Legant W, Dahan M, Lionnet T, Betzig E et al..  2014.  Single-molecule dynamics of enhanceosome assembly in embryonic stem cells.. Cell. 156:1274-85.
2011
Liu Z, Scannell DR, Eisen MB, Tjian R.  2011.  Control of embryonic stem cell lineage commitment by core promoter factor, TAF3.. Cell. 146(5):720-31.
2009
Meng Z, Liu Z, Lou Z, Gong X, Cao Y, Bartlam M, Zhang K, Rao Z.  2009.  Purification, characterization and crystallization of pyrroline-5-carboxylate reductase from the hyperthermophilic archeon Sulfolobus Solfataricus.. Protein Expression and Purification. 64:125-30.
2006
Meng Z, Lou Z, Liu Z, Li M, Zhao X, Bartlam M, Rao Z.  2006.  Crystal structure of human pyrroline-5-carboxylate reductase.. Journal of Molecular Biology. 359(5):1364-77.