Biblio

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2025
Wong VC, Walpita D, Liu Z, O'Shea EK.  2025.  Single-Particle Tracking of AMPA Receptor-Containing Vesicles. Bio-protocol. 15(11)
2024
Daugird TA, Shi Y, Holland KL, Rostamian H, Liu Z, Lavis LD, Rodriguez J, Strahl BD, Legant WR.  2024.  Correlative single molecule lattice light sheet imaging reveals the dynamic relationship between nucleosomes and the local chromatin environment.. Nat. Commun..
Van HT, Xie G, Dong P, Liu Z, Ge K.  2024.  KMT2 family of H3K4 methyltransferases: enzymatic activity-dependent and -independent functions.. Journal of Molecular Biology. :168453.
Wong VC, Houlihan PR, Liu H, Walpita D, DeSantis MC, Liu Z, O'Shea EK.  2024.  Plasticity-induced actin polymerization in the dendritic shaft regulates intracellular AMPA receptor trafficking.. Elife. 13
2023
Liu Y, Huang Z, Liu H, Ji Z, Arora A, Cai D, Wang H, Liu M, Simko EAJ, Zhang Y et al..  2023.  DNA-initiated epigenetic cascades driven by C9orf72 hexanucleotide repeat.. Neuron. 111(8):1205-21.
Bonello TT, Cai D, Fletcher GC, Wiengartner K, Pengilly V, Lange KS, Liu Z, Lippincott-Schwartz J, Kavran JM, Thompson BJ.  2023.  Phase separation of Hippo signalling complexes.. EMBO Journal. 42(6):e112863.
2022
Xie L, Dong P, Qi Y, Hsieh T-HS, English BP, Jung S, Chen X, De Marzio M, Casellas R, Chang HY et al..  2022.  BRD2 compartmentalizes the accessible genome.. Nature Genetics. 54(4):481-491.
Lange JT, Rose JC, Chen CY, Pichugin Y, Xie L, Tang J, Hung KL, Yost KE, Shi Q, Erb ML et al..  2022.  The evolutionary dynamics of extrachromosomal DNA in human cancers.. Nature Genetics.
2021
Cai D, Liu Z, Lippincott-Schwartz J.  2021.  Biomolecular Condensates and Their Links to Cancer Progression.. Trends in Biochemical Sciences.
Cai D, Liu Z, Lippincott-Schwartz J.  2021.  Biomolecular Condensates and Their Links to Cancer Progression.. Trends in Biochemical Sciences. 46(7):535-549.
McCann AJ, Lou J, Moustaqil M, Graus MS, Blum A, Fontaine F, Liu H, Luu W, Rudolffi-Soto P, Koopman P et al..  2021.  A dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity.. Nucleic Acids Research.
McCann AJ, Lou J, Moustaqil M, Graus MS, Blum A, Fontaine F, Liu H, Luu W, Rudolffi-Soto P, Koopman P et al..  2021.  A dominant-negative SOX18 mutant disrupts multiple regulatory layers essential to transcription factor activity.. Nucleic Acids Research.
Hung KL, Yost KE, Xie L, Shi Q, Helmsauer K, Luebeck J, Schöpflin R, Lange JT, González RChamorro, Weiser NE et al..  2021.  ecDNA hubs drive cooperative intermolecular oncogene expression.. Nature. 600(7890):731-6.
Grimm JB, Xie L, Casler JC, Patel R, Tkachuk AN, Falco N, Choi H, Lippincott-Schwartz J, Brown TA, Glick BS et al..  2021.  A general method to improve fluorophores using deuterated auxochromes.. JACS Au. 1(5):690-6.
Xie L, Liu Z.  2021.  Single-cell imaging of genome organization and dynamics.. Molecular Systems Biology. 17(7):e9653.
2020
Xie L, Dong P, Chen X, Hsieh T-HS, Banala S, De Marzio M, English BP, Qi Y, Jung SKyoung, Kieffer-Kwon K-R et al..  2020.  3D ATAC-PALM: super-resolution imaging of the accessible genome.. Nature Methods. 17(4):430-6.
Grimm JB, Tkachuk AN, Xie L, Choi H, Mohar B, Falco N, Schaefer K, Patel R, Zheng Q, Liu Z et al..  2020.  A general method to optimize and functionalize red-shifted rhodamine dyes.. Nature Methods.
Ochiai H, Hayashi T, Umeda M, Yoshimura M, Harada A, Shimizu Y, Nakano K, Saitoh N, Liu Z, Yamamoto T et al..  2020.  Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells.. Science Advances. 6(25):eaaz6699.
Matthies D, Lee NYJ, Gatera I, H Pasolli A, Zhao X, Liu H, Walpita D, Liu Z, Yu Z, Ioannou MS.  2020.  Microdomains form on the luminal face of neuronal extracellular vesicle membranes.. Scientific Reports. 10(1):11953.
Binns TC, Ayala AX, Grimm JB, Tkachuk AN, Castillon GA, Phan S, Zhang L, Brown TA, Liu Z, Adams SR et al..  2020.  Rational design of bioavailable photosensitizers for manipulation and imaging of biological systems.. Cell Chemical Biology. 27(8):1063-72.
Lerner J, Gomez-Garcia PAurelio, McCarthy RL, Liu Z, Lakadamyali M, Zaret KS.  2020.  Two-parameter mobility assessments discriminate diverse regulatory factor behaviors in chromatin.. Molecular Cell. 79(4):677.
Lerner J, Gomez-Garcia PAurelio, McCarthy RL, Liu Z, Lakadamyali M, Zaret KS.  2020.  Two-parameter single-molecule analysis for measurement of chromatin mobility.. STAR Protocols. 1(3):100223.
2019
Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang Y-C, Campagnola L, Seeman SC, Yu J et al..  2019.  Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.. Science. 365(6454):699-704.
Piccolo FM, Liu Z, Dong P, Hsu C-L, Stoyanova EI, Rao A, Tjian R, Heintz N.  2019.  MeCP2 nuclear dynamics in live neurons results from low and high affinity chromatin interactions.. eLife. 8
Yu H, Yang F, Dong P, Liao S, Liu WR, Zhao G, Qin B, Dou Z, Liu Z, Liu W et al..  2019.  NDP52 tunes cortical actin interaction with astral microtubules for accurate spindle orientation.. Cell Research. 29(8):666-79.