Biblio

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2020
Ueda HR, Ertürk A, Chung K, Gradinaru V, Chédotal A, Tomancak P, Keller PJ.  2020.  Tissue clearing and its applications in neuroscience. Nature Reviews Neuroscience.
Ueda HR, Ertürk A, Chung K, Gradinaru V, Chédotal A, Tomancak P, Keller PJ.  2020.  Tissue clearing and its applications in neuroscience.. Nature Reviews Neuroscience. 21(2):61-79.
2019
Muenster S, Jain A, Mietke A, Pavlopoulos A, Grill SW, Tomancak P.  2019.  Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects.. Nature.
Jain A, Ulman V, Mukherjee A, Prakash M, Pimpale L, Munster S, Panfilio KA, Jug F, Grill SWA, Tomancak P et al..  2019.  Regionalized tissue fluidization by an actomyosin cable is required for epithelial gap closure during insect gastrulation.. Nature Communications. 11(1):5604.
2018
Muenster S, Jain A, Mietke A, Pavlopoulos A, Grill SW, Tomancak P.  2018.  Integrin-mediated attachment of the blastoderm to the vitelline envelope impacts gastrulation of insects.. bioRxiv.
2017
Wolff C, Tinevez J-Y, Pietzsch T, Stamataki E, Harich B, Guignard L, Preibisch S, Shorte S, Keller PJ, Tomancak P et al..  2017.  Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.. eLife. 7:e34410.
2015
Pietzsch T, Saalfeld S, Preibisch S, Tomancak P.  2015.  BigDataViewer: visualization and processing for large image data sets.. Nature Methods. 12(6):481-3.
Jambor H, Surendranath V, Kalinka AT, Mejstrik P, Saalfeld S, Tomancak P.  2015.  Systematic imaging reveals features and changing localization of mRNAs in Drosophila development.. Elife. 4
2014
Jug F, Pietzsch T, Preibisch S, Tomancak P.  2014.  Bioimage informatics in the context of Drosophila research.. Methods. 68(1):60-73.
Preibisch S, Amat F, Stamataki E, Sarov M, Singer RH, Myers E, Tomancak P.  2014.  Efficient Bayesian-based multiview deconvolution.. Nature Methods. 11:645-8.
2012
Pietzsch T, Preibisch S, Tomancak P, Saalfeld S.  2012.  Advanced Programming with ImgLib2. Proceedings of the ImageJ User and Developer Conference.
Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B et al..  2012.  Biological imaging software tools.. Nature Methods. 9(7):697-710.
Cardona A, Tomancak P.  2012.  Current challenges in open-source bioimage informatics.. Nature Methods. 9(7):661-5.
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B et al..  2012.  Fiji: an open-source platform for biological-image analysis.. Nature Methods. 9(7):676-82.
Pietzsch T, Preibisch S, Tomancak P, Saalfeld S.  2012.  ImgLib2--generic image processing in Java.. Bioinformatics. 28(22):3009-11.
Saalfeld S, Pietzsch T, Tomancak P, Preibisch S.  2012.  ImgLib2—Generic Image Processing in Java. ImageJ User and Developer Conference.
Preibisch S, Pietzsch T, Myers E, Tomancak P, Saalfeld S.  2012.  Introduction to ImgLib2. Proceedings of the ImageJ User and Developer Conference.
Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ.  2012.  TrakEM2 software for neural circuit reconstruction.. PLoS One. 7:e38011.
Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ.  2012.  TrakEM2 software for neural circuit reconstruction.. PLoS One. 7(6):e38011.
2010
Cardona A, Saalfeld S, Preibisch S, Schmid B, Cheng A, Pulokas J, Tomancak P, Hartenstein V..  2010.  An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy.. PLoS Biology. 8(10)
Preibisch S, Tomancak P, Saalfeld S.  2010.  Into ImgLib—Generic image processing in Java. Proceedings of the ImageJ User and Developer Conference.
Preibisch S, Saalfeld S, Schindelin J, Tomancak P.  2010.  Software for bead-based registration of selective plane illumination microscopy data.. Nature Methods. 7(6):418-9.
2009
Preibisch S, Saalfeld S, Rohlfing T, Tomancak P.  2009.  Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching.. Medical Imaging 2009: Image Processing. 7259:72592S.
Saalfeld S, Cardona A, Hartenstein V, Tomancak P.  2009.  CATMAID: collaborative annotation toolkit for massive amounts of image data.. Bioinformatics. 25(15):1984-6.
Preibisch S, Saalfeld S, Tomancak P.  2009.  Globally optimal stitching of tiled 3D microscopic image acquisitions.. Bioinformatics. 25(11):1463-5.