Biblio

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2026
Cheong HSj, Eichler K, Stürner T, Asinof SK, Champion AS, Marin EC, Oram TB, Sumathipala M, Venkatasubramanian L, Namiki S et al..  2026.  Organization of circuits linking descending input to motor output in the Drosophila Male Adult Nerve Cord connectome. eLife. 13:RP96084.
Berg S, Beckett IR, Costa M, Schlegel P, Januszewski M, Marin EC, Nern A, Preibisch S, Qiu W, Takemura S-ya et al..  2026.  Sexual dimorphism in the complete Drosophila male central nervous system connectome.. Cell. 189(18):5504-5526.e15.
2025
Petkova MD, Januszewski M, Blakely T, Herrera KJ, Schuhknecht GFP, Tiller R, Choi J, Schalek RL, Boulanger-Weill J, Peleg A et al..  2025.  A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. bioRxiv.
Cheong HSj, Eichler K, Stürner T, Asinof SK, Champion AS, Marin EC, Oram TB, Sumathipala M, Venkatasubramanian L, Namiki S et al..  2025.  Transforming descending input into motor output: An analysis of the Drosophila Male Adult Nerve Cord connectome. eLife.
2022
Plaza SM, Clements J, Dolafi T, Umayam L, Neubarth NN, Scheffer LK, Berg S.  2022.  neuPrint: An open access tool for EM connectomics.. Frontiers in Neuroinformatics. 16:896292.
2020
Scheffer LK, C Xu S, Januszewski M, Lu Z, Takemura S-ya, Hayworth KJ, Huang GB, Shinomiya K, Maitlin-Shepard J, Berg S et al..  2020.  A connectome and analysis of the adult Drosophila central brain.. Elife. 9
2019
Berg S, Kutra D, Kroeger T, Straehle CN, Kausler BX, Haubold C, Schiegg M, Ales J, Beier T, Rudy M et al..  2019.  ilastik: interactive machine learning for (bio)image analysis.. Nature Methods. 16:1226-32.
2017
Takemura S-ya, Aso Y, Hige T, Wong AM, Lu Z, C Xu S, Rivlin PK, Hess HF, Zhao T, Parag T et al..  2017.  A connectome of a learning and memory center in the adult Drosophila brain.. eLife. 6:e26975.
Beier T, Pape C, Rahaman N, Prange T, Berg S, Bock DD, Cardona A, Knott GW, Plaza SM, Scheffer LK et al..  2017.  Multicut brings automated neurite segmentation closer to human performance.. Nature Methods. 14(2):101-102.
2016
Holcomb PS, Morehead M, Doretto G, Chen P, Berg S, Plaza S, Spirou G.  2016.  Rapid and semi-automated extraction of neuronal cell bodies and nuclei from electron microscopy image stacks.. Methods in molecular biology (Clifton, N.J.). 1427:277-90.
Haubold C, Schiegg M, Kreshuk A, Berg S, Koethe U, Hamprecht FA.  2016.  Segmenting and Tracking Multiple Dividing Targets Using ilastik.. Advances in anatomy, embryology, and cell biology. 219:199-229.