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Labs:
Project Teams:
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Fly Facility
- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Janelia Experimental Technology
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing Software
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Export 35 results:
Author Title Type [ Year] Filters: Author is Pachitariu, Marius [Clear All Filters]
2024
2023
2022
Pachitariu M, Stringer C.
2022. Cellpose 2.0: how to train your own model.. Nature Methods. 19(12):1634-41.
Pandey B, Pachitariu M, Brunton BW, Harris KDecker.
2022. Structured random receptive fields enable informative sensory encodings.. PLoS Computational Biology. 18(10):e1010484.
Gardner RJ, Hermansen E, Pachitariu M, Burak Y, Baas NA, Dunn BA, Moser M-B, Moser EI.
2022. Toroidal topology of population activity in grid cells.. Nature. 602(7895):123-128.
2021
Stringer C, Wang T, Michaelos M, Pachitariu M.
2021. Cellpose: a generalist algorithm for cellular segmentation.. Nature Methods. 18(1):100-106.
Lee KHyun, Ni Y-L, Colonell J, Karsh B, Putzeys J, Pachitariu M, Harris TD, Meister M.
2021. Electrode pooling can boost the yield of extracellular recordings with switchable silicon probes.. Nature Communications. 12(1):5245.
Stringer C, Michaelos M, Tsyboulski D, Lindo SE, Pachitariu M.
2021. High-precision coding in visual cortex.. Cell. 184(10):2767-78.
Eiselt A-K, Chen S, Chen J, Arnold J, Kim T, Pachitariu M, Sternson SM.
2021. Hunger or thirst state uncertainty is resolved by outcome evaluation in medial prefrontal cortex to guide decision-making.. Nature Neuroscience. 24(7):907-912.
Steinmetz NA, Aydın Ç, Lebedeva A, Okun M, Pachitariu M, Bauza M, Beau M, Bhagat J, Böhm C, Broux M et al..
2021. Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings.. Science. 372(6539)
Siegle JH, Jia X, Durand S, Gale S, Bennett C, Graddis N, Heller G, Ramirez TK, Choi H, Luviano JA et al..
2021. Survey of spiking in the mouse visual system reveals functional hierarchy.. Nature. 592(7852):86-92(7852):86-92.
2020
Schröder S, Steinmetz NA, Krumin M, Pachitariu M, Rizzi M, Lagnado L, Harris KD, Carandini M.
2020. Arousal modulates retinal output.. Neuron. 107(3):487.
2019
Stringer C, Michaelos M, Pachitariu M.
2019. High precision coding in visual cortex. BioRxiv. :679324.
Stringer C, Pachitariu M, Steinmetz NA, Carandini M, Harris KD.
2019. High-dimensional geometry of population responses in visual cortex.. Nature. 571(7765):361-65.
Stringer C, Pachitariu M, Steinmetz NA, Reddy CBai, Carandini M, Harris KD.
2019. Spontaneous behaviors drive multidimensional, brain-wide population activity.. Science. 364(6437):255.
Allen WE, Chen MZ, Pichamoorthy N, Tien RH, Pachitariu M, Luo L, Deisseroth K.
2019. Thirst regulates motivated behavior through modulation of brainwide neural population dynamics.. Science. 364(6437):253.
2018
Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P et al..
2018. Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLOS Computational Biology. 14(5):e1006157.
Stringer C, Pachitariu M.
2018. Computational processing of neural recordings from calcium imaging data.. Current Opinion in Neurobiology. 55:22-31.
Pachitariu M, Stringer C, Harris KD.
2018. Robustness of spike deconvolution for neuronal calcium imaging.. The Journal of Neuroscience : the official journal of the Society for Neuroscience. 38(37):7976-85.
Dipoppa M, Ranson A, Krumin M, Pachitariu M, Carandini M, Harris KD.
2018. Vision and locomotion shape the interactions between neuron types in mouse visual cortex.. Neuron. 98(3):602-15.
2017
Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P et al..
2017. Community-based benchmarking improves spike inference from two-photon calcium imaging data.. PLoS Computational Biology. 14(5):e1006157.
Jun JJ, Steinmetz NA, Siegle JH, Denman DJ, Bauza M, Barbarits B, Lee AK, Anastassiou CA, Andrei A, Aydın Ç et al..
2017. Fully integrated silicon probes for high-density recording of neural activity.. Nature. 551(7679):232-236.
Pachitariu M, Stringer C, Harris KD.
2017. Robustness of spike deconvolution for calcium imaging of neural spiking.. bioRxiv. :156786.
Pachitariu M, Stringer C, Dipoppa M, Schröder S, L Rossi F, Dalgleish H, Carandini M, Harris KD.
2017. Suite2p: beyond 10,000 neurons with standard two-photon microscopy.. bioRxiv. :061507.