Biblio

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2023
Martelli F, Ravenscroft TA, Hutchison W, Batterham P.  2023.  Tissue-specific transcriptome analyses in Drosophila provide novel insights into the mode of action of the insecticide spinosad and the function of its target, nAChRα6.. Pest Management Science.
Rzepka N, Bogovic JA, Moore JA.  2023.  Toward scalable reuse of vEM data: OME-Zarr to the rescue.. Methods in Cell Biology. 177:359-387.
Heinrich L, Patton W, Bennett D, Ackerman D, Park G, Bogovic JA, Eckstein N, Petruncio A, Clements J, Pang S et al..  2023.  Towards Generalizable Organelle Segmentation in Volume Electron Microscopy.. Microscopy and Microanalysis. 29(Supplement_1):975.
Cheong H.SJ, Eichler K., Stuerner T., Asinof S.K, Champion A.S, Marin E.C, Oram T.B, Sumathipala M., Venkatasubramanian L., Namiki S. et al..  2023.  Transforming descending input into behavior: The organization of premotor circuits in the Drosophila Male Adult Nerve Cord connectome. bioRxiv.
2024
Hadas R, Rubinstein H, Mittnenzweig M, Mayshar Y, Ben-Yair R, Cheng S, Aguilera-Castrejon A, Reines N, Orenbuch A-H, Lifshitz A et al..  2024.  Temporal BMP4 effects on mouse embryonic and extraembryonic developmentAbstract. Nature. 634(8034):652-661.
Hermundstad AM, Młynarski WF.  2024.  A theory of rapid behavioral inferences under the pressure of time. PRX Life. 4
Chandler T, Guo M, Su Y, Chen J, Wu Y, Liu J, Agashe A, Fischer RS, Mehta SB, Kumar A et al..  2024.  Three-dimensional spatio-angular fluorescence microscopy with a polarized dual-view inverted selective-plane illumination microscope (pol-diSPIM). bioRxiv.
Pérez-Chávez I, Koberstein JN, Pueyo JMalo, Gilglioni EH, Vertommen D, Baeyens N, Ezeriņa D, Gurzov EN, Messens J.  2024.  Tracking fructose 1,6-bisphosphate dynamics in liver cancer cells using a fluorescent biosensor. iScience. 27:111336.
Stringer C, Pachitariu M.  2024.  Transformers do not outperform Cellpose. bioRxiv.
Kumar P, Gutu A, Waring A, Brown TA, Lavis LD, Tebo AG.  2024.  Transforming chemigenetic bimolecular fluorescence complementation systems into chemical dimerizers using chemistry.. bioRxiv.
Renganathan B, Moore AS, Yeo W-H, Petruncio A, Ackerman D, Wiegel A, Team CM, H. Pasolli A, C. Xu S, Hess HF et al..  2024.  Transport and Organization of Individual Vimentin Filaments Within Dense Networks Revealed by Single Particle Tracking and 3D FIB-SEM. bioRxiv.
Chadwick SR, Stack-Couture S, Berg MD, Di Gregorio S, Lung B, Genereaux J, Moir RD, Brandl CJ, Willis IM, Snapp EL et al..  2024.  TUDCA modulates drug bioavailability to regulate resistance to acute ER stress in Saccharomyces cerevisiae. Mol Biol Cell. :mbcE24040147.
Kivimaki SE, Dempsey S, Tani JM, Camper C, Hicklin IK, Blaby-Haas CE, Brown AM, Melville S.  2024.  Type IV pili-associated secretion of a biofilm matrix protein from Clostridium perfringens that forms intermolecular isopeptide bonds. bioRxiv.
2025
Ott CM, Mukhopadhyay S.  2025.  Taking down the primary cilium: Pathways for disassembly in differentiating cells.. Bioessays. :e70060.
Scholz-Carson E., Iyer A.R, Ewer J., Fernandez MP.  2025.  Targets of circadian clock neurons influence core clock parameters. bioRxiv.
Zhang H, Ding L, Hu A, Shi X, Huang P, Lu H, Tillberg PW, Wang MC, Li L.  2025.  TEMI: Tissue Expansion Mass Spectrometry Imaging. Nat Methods.
Hermundstad AM, Młynarski WF.  2025.  A theory of rapid behavioral inferences under the pressure of time. bioRxiv.
Zhang L-Q, Mao J, Aguirre GKarl, Stocker AA.  2025.  The tilt illusion arises from an efficient reallocation of neural coding resources at the contextual boundary. Proc Natl Acad Sci U S A.
Heldman R, Pang D, Zhao X, Mensh B, Wang Y.  2025.  Time or distance encoding by hippocampal neurons via heterogeneous ramping rates.. Nat Commun. 16(1):11083.
Tsuji K, Yamanaka M, Kumamoto Y, Tamura S, Miyamura W, Kubo T, Mizushima K, Kono K, Hirano H, Shiozaki M et al..  2025.  Time-deterministic cryo-optical microscopy.. Light Sci Appl. 14(1):275.
Ding L.  2025.  Tissue expansion-enhanced mass-spectrometry imaging decodes biomolecular landscapes.. Nat Rev Mol Cell Biol.
Farhan H, Raote I, Campelo F, Ge L, Hirschberg K, Forrester A, Zanetti G, Lippincott-Schwartz J, Pastor-Pareja JCarlos, Perez F et al..  2025.  Towards a unified framework for the function of endoplasmic reticulum exit sites.. Nat Rev Mol Cell Biol.
Cheong HSj, Eichler K, Stürner T, Asinof SK, Champion AS, Marin EC, Oram TB, Sumathipala M, Venkatasubramanian L, Namiki S et al..  2025.  Transforming descending input into motor output: An analysis of the Drosophila Male Adult Nerve Cord connectome. eLife.
Yilmaz A, Gurhan G, Comar M-Y, Viukov S, Serfaty I, Gayretli M, Golenchenko S, Lokshtanov D, Ashouokhi S, Polanco A et al..  2025.  Transgene-free generation of mouse post-gastrulation whole embryo models solely from naive ESCs and iPSCs.. Cell Stem Cell.
Hajji LEl, Bunel B, Joliot O, Li C, Tebo AG, Rampon C, Volovitch M, Fischer E, Pietrancosta N, Perez F et al..  2025.  A tunable and versatile chemogenetic near infrared fluorescent reporter. Nat Commun.