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2022
Garcia-Marques J, Lee T.  2022.  Tracing and Manipulating Drosophila Cell Lineages Based on CRISPR: CaSSA and CLADES.. Methods in Molecular Biology. 2540:201-217.
[Anonymous].  2022.  Tracking by Weakly-Supervised Learning and Graph Optimization for Whole-Embryo C. elegans lineages. International Conference on Medical Image Computing and Computer-Assisted Intervention.
Xie Q, Li J, Li H, Udeshi ND, Svinkina T, Orlin D, Kohani S, Guajardo R, Mani DR, Xu C et al..  2022.  Transcription factor Acj6 controls dendrite targeting via a combinatorial cell-surface code.. Neuron. 110(14):2299-2314.e8.
Stern DL.  2022.  Transgenic tools for targeted chromosome rearrangements allow construction of balancer chromosomes in non-melanogaster Drosophila species.. G3 (Bethesda).
Zhu P-P, Hung H-F, Batchenkova N, Nixon-Abell J, Henderson J, Zheng P, Renvoisé B, Pang S, C Xu S, Saalfeld S et al..  2022.  Transverse endoplasmic reticulum expansion in hereditary spastic paraplegia corticospinal axons.. Human Molecular Genetics.
Zhu P-P, Hung H-F, Batchenkova N, Nixon-Abell J, Henderson J, Zheng P, Renvoisé B, Pang S, C Xu S, Saalfeld S et al..  2022.  Transverse endoplasmic reticulum expansion in hereditary spastic paraplegia corticospinal axons.. Human Molecular Genetics. 31(16):2779-2795.
2021
Daie K, Svoboda K, Druckmann S.  2021.  Targeted photostimulation uncovers circuit motifs supporting short-term memory.. Nature Neuroscience. 24(2):259-265.
Espinosa-Medina I, Feliciano D, Belmonte-Mateos C, Garcia-Marques J, Foster B, Miyares RLinda, Pujades C, Koyama M, Lee T.  2021.  TEMPO: A system to sequentially label and genetically manipulate vertebrate cell lineages. bioRxiv.
Xie Q, Brbić M, Horns F, Kolluru SSaroja, Jones RC, Li J, Reddy AR, Xie A, Kohani S, Li Z et al..  2021.  Temporal evolution of single-cell transcriptomes of olfactory projection neurons.. Elife. 10
Hammer M, Huisman M, Rigano A, Boehm U, Chambers JJ, Gaudreault N, North AJ, Pimentel JA, Sudar D, Bajcsy P et al..  2021.  Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.. bioRxiv.
Hammer M, Huisman M, Rigano A, Boehm U, Chambers JJ, Gaudreault N, North AJ, Pimentel JA, Sudar D, Bajcsy P et al..  2021.  Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.. Nature Methods. 18(12):1427-1440.
Ma D, Przybylski D, Abruzzi KC, Schlichting M, Li Q, Long X, Rosbash M.  2021.  A transcriptomic taxonomy of circadian neurons around the clock.. eLife. 10
2020
Speiser A, Müller L-R, Matti U, Obara CJ, Legant WR, Ries J, Macke JH, Turaga SC.  2020.  Teaching deep neural networks to localize single molecules for super-resolution microscopy.
Weber C, Zhou Y, Lee JGwan, Looger LL, Qian G, Ge C, Capel B.  2020.  Temperature-dependent sex determination is mediated by pSTAT3 repression of Kdm6b... Science. 368(6488):303-306.
Biswas T, Bishop WE, Fitzgerald JE.  2020.  Theoretical principles for illuminating sensorimotor processing with brain-wide neuronal recordings.. Current Opinion in Neurobiology. 65:138-145.
Hoffman DP, Betzig E.  2020.  Tiled reconstruction improves structured illumination microscopy.. bioRxiv.
Ueda HR, Ertürk A, Chung K, Gradinaru V, Chédotal A, Tomancak P, Keller PJ.  2020.  Tissue clearing and its applications in neuroscience. Nature Reviews Neuroscience.
Ueda HR, Ertürk A, Chung K, Gradinaru V, Chédotal A, Tomancak P, Keller PJ.  2020.  Tissue clearing and its applications in neuroscience.. Nature Reviews Neuroscience. 21(2):61-79.
Aso Y, Rubin GM.  2020.  Toward nanoscale localization of memory engrams in Drosophila.. Journal of Neurogenetics. 34(1):151-55.
Correia MM, Rittman T, Barnes CL, Coyle-Gilchrist IT, Ghosh B, Hughes LE, Rowe JB.  2020.  Towards accurate and unbiased imaging-based differentiation of Parkinson's disease, progressive supranuclear palsy and corticobasal syndrome.. Brain Communications. 2(1):fcaa051.
Bridi MS, Schoch H, Florian C, Poplawski SG, Banerjee A, Hawk JD, Banks GS, Lejards C, Hahn C-G, Giese KPeter et al..  2020.  Transcriptional co-repressor Sin3a regulates hippocampal synaptic plasticity via Homer1/mGluR5.. JCI Insight.
Anton OM, Peterson ME, Hollander MJ, Dorward DW, Arora G, Traba J, Rajagopalan S, Snapp EL, K Garcia C, Waldmann TA et al..  2020.  Trans-endocytosis of intact IL-15Rα-IL-15 complex from presenting cells into NK cells favors signaling for proliferation.. Proceedings of the National Academy of Sciences of the United States of America. 117(1):522-531.
Lerner J, Gomez-Garcia PAurelio, McCarthy RL, Liu Z, Lakadamyali M, Zaret KS.  2020.  Two-parameter mobility assessments discriminate diverse regulatory factor behaviors in chromatin.. Molecular Cell. 79(4):677.
Lerner J, Gomez-Garcia PAurelio, McCarthy RL, Liu Z, Lakadamyali M, Zaret KS.  2020.  Two-parameter single-molecule analysis for measurement of chromatin mobility.. STAR Protocols. 1(3):100223.
2019
Hu J, Worrall LJ, Vuckovic M, Hong C, Deng W, Atkinson CE, B. Finlay B, Yu Z, Strynadka NCJ.  2019.  T3S injectisome needle complex structures in four distinct states reveal the basis of membrane coupling and assembly.. Nature Microbiology. 4(11):2010-19.