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Author Title Type [ Year(Asc)]
2025
Suarez-Gomez D, Perez-Rosas NC, Miranda-Contreras GI, Colom-Braña SR, Zhang W, Mim MSahir, Tan S, Gazzo D, Tepole ABuganza, Deng Q et al..  2025.  CalciumInsights: An Open-Source, Tissue-Agnostic Graphical Interface for High-Quality Analysis of Calcium Signals. bioRxiv.
Shitara A, Nagase H, Bleck CKE, Ohno Y, Kataoka H, Satoh K, Kashimata M.  2025.  Cdc42 regulates apical membrane fusion via the Rab11a–VAMP2 pathway in salivary gland acinar cells. bioRxiv.
Chiu H, Robie AA, Branson K, Vippa T, Epstein S, Rubin GM, Anderson DJ, Schretter CE.  2025.  Cell type-specific contributions to a persistent aggressive internal state in female Drosophila. Elife. 12
Wolff T, Eddison M, Chen N, Nern A, Sundaramurthi P, Sitaraman D, Rubin GM.  2025.  Cell type-specific driver lines targeting the Drosophila central complex and their use to investigate neuropeptide expression and sleep regulation. elife.
Stringer C, Pachitariu M.  2025.  Cellpose3: one-click image restoration for improved cellular segmentation.. Nat Methods.
Pachitariu M, Rariden M, Stringer C.  2025.  Cellpose-SAM: superhuman generalization for cellular segmentation. bioRxiv.
Gupta H, Haase J, Wu Y, Chen J, Karadimov G, Shroff H, Kelly AE.  2025.  The CENP-A chaperone complex spatially organizes centromeres. bioRxiv.
Aaron JS, Jacobs CA, Malacrida L, Keppler A, French P, Fletcher DA, Wood C, Brown CM, Wright GD, Ogawa S et al..  2025.  Challenges of microscopy technology dissemination to resource-constrained communities.. Nat Methods.
Hu G, Savini M, Cooke MBrandon, Wei X, Deng D, Gao SM, Xia RAlps, Guan Y, Wen AX, Yu X et al..  2025.  Chemical modulation of gut bacterial metabolism induces colanic acid and extends the lifespan of nematode and mammalian hosts.. PLoS Biol. 23(11):e3002749.
Fukaya Y, Yoshikawa M, Aoki K, Farrants H, Johnsson K, Tsukiji S.  2025.  A chemically switchable synthetic condensate platform for reversible protein sequestration and release. ACS Chem Biol.
Faini G, Tuffery M, Saleem A, Zhang L, Du F, Le Bourdelles G, Duroure K, Schreiter ER, Tanese D, Emiliani V et al..  2025.  CHLOK: a chemigenetic multicolor labeling system to visualize neuronal birthdate and circuit integration. Research Square.
Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al..  2025.  Chromatix: a differentiable, GPU-accelerated wave-optics library. bioRxiv.
Glendening AM, Stephens C, Vuruputoor VS, Chaganti T, Myles MN, Stern DL, Abdelalim M, Juang Y-P, Hogenhout SA, Mathers TC et al..  2025.  Chromosome scale genomes of two invasive Adelges species enable virtual screening for selective adelgicides.. G3 (Bethesda). 16(1)
Bulanchuk P, Koay SAnn, Romani S.  2025.  A Class of Markovian Self-Reinforcing Processes with Power-Law Distributions. arXiv.
Csillag V, Forastieri C, Szücs GMartina, Vidal ITalaya, Bizzozzero MHiriart, Lavis LD, Calvigioni D, Fuzik J.  2025.  Collateral connectomes of Esr1-positive hypothalamic neurons modulate defensive behavior plasticity. bioRxiv.
Park SYun, Sheridan A, An B, Jarvis E, Lyudchik J, Patton W, Axup JY, Chan SW, Damstra HGJ, Leible D et al..  2025.  Combinatorial protein barcodes enable self-correcting neuron tracing with nanoscale molecular context. bioRxiv.
Pjanovic V, Zavatone-Veth JA, Masset P, Keemink SW, Nardin M.  2025.  Combining Sampling Methods with Attractor Dynamics in Spiking Models of Head-Direction Systems. bioRxiv.
Pentimalli TMassimo, Schallenberg S, León-Periñán D, Legnini I, Theurillat I, Thomas G, Boltengagen A, Fritzsche S, Nimo J, Ruff L et al..  2025.  Combining spatial transcriptomics and ECM imaging in 3D for mapping cellular interactions in the tumor microenvironment.. Cell Syst. :101261.
Stürner T, Brooks P, Capdevila LSerratosa, Morris BJ, Javier A, Fang S, Gkantia M, Cachero S, Beckett IR, Marin EC et al..  2025.  Comparative connectomics of Drosophila descending and ascending neurons.. Nature.
Reyna-Neyra A, Pandya RD, Lackner EM, Pang S, Li W-P, C. Xu S, Zugates C, Burdyniuk M, Pandya VD, Weisz OA et al..  2025.  Compartmentalization of the Endoplasmic Reticulum in Mouse Kidney Proximal Tubule Epithelial Cells. Physiology. 40:1280.
Erginkaya M, Cruz T, Brotas M, Steck K, Nern A, Torrão F, Varela N, Bock D, Reiser M, M Chiappe E.  2025.  A competitive disinhibitory network for robust optic flow processing in Drosophila. Nat Neurosci..
AbdelRahman NY, Jiang W, Coddington LT, Gong S, Dudman JT, Hermundstad AM.  2025.  Composing trajectories for rapid inference of navigational goals. bioRxiv.
Cai C, Traubert O, Tormes-Vaquerano J, M Eybposh H, Turaga SC, Rodriguez-Romaguera J, Naumann EA, Pégard NC.  2025.  Compressive streak microscopy for fast sampling of fluorescent reporters of neural activity.. Neurophotonics. 12(2):025013.
Park J, Polidoro P, Fortunato C, Arnold J, Mensh B, Gallego JA, Dudman JT.  2025.  Conjoint specification of action by neocortex and striatum. Neuron.
Yin Y, Hoeller J, Mathiasen A, Tsang J, Charrier MEstelle, Cardona A.  2025.  The Connectome Interpreter Toolkit. bioRxiv.