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Author Title Type [ Year(Asc)]
2025
Zhong L, Baptista S, Gattoni R, Arnold J, Flickinger D, Stringer C, Pachitariu M.  2025.  Unsupervised pretraining in biological neural networks. Nature.
Zung JL, Namiki S, Meissner GW, Costa M, Eichler K, Stürner T, Jefferis GSXE, Managan C, Team FLProject, Korff W et al..  2025.  An updated catalogue of split-GAL4 driver lines for descending neurons in Drosophila melanogaster. bioRxiv.
Li J, Liu Y.  2025.  Vagal sensory circuits of the lower airway in respiratory physiology: Insights from neuronal diversity.. Curr Opin Neurobiol. 92:103000.
Renganathan B, Moore AS, Yeo W-H, Petruncio A, Ackerman D, Weigel AV, Team TCellMap, H. Pasolli A, C. Xu S, Shtengel G et al..  2025.  Vimentin filament transport and organization revealed by single-particle tracking and 3D FIB-SEM. Journal of Cell Biology. 224:e202406054.
Kawashima T, Wei Z, Haruvi R, Shainer I, Narayan S, Baier H, Ahrens MB.  2025.  Voltage imaging reveals circuit computations in the raphe underlying serotonin-mediated motor vigor learning. Neuron.
Chandler T, Guo M, Su Y, Chen J, Wu Y, Liu J, Agashe A, Fischer RS, Mehta SB, Kumar A et al..  2025.  Volumetric imaging of the 3D orientation of cellular structures with a polarized fluorescence light-sheet microscope.. Proc Natl Acad Sci . 122(8):e2406679122.
Vaxenburg R, Siwanowicz I, Merel J, Robie AA, Morrow C, Novati G, Stefanidi Z, Card GM, Reiser MB, Botvinick MM et al..  2025.  Whole-body simulation of realistic fruit fly locomotion with deep reinforcement learning. Nature. 643(8074)
Chen W, James B, Ruetten VMS, Banala S, Wei Z, Fleishman G, Rubinov M, Fishman MC, Engert F, Lavis LD et al..  2025.  Whole-brain, all-optical interrogation of neuronal dynamics underlying gut interoception in zebrafish. bioRxiv.
Lilao-Garzón J, Corujo-Simon E, Vinyoles M, Fischer SC, Guillén J, Balayo T, Muñoz-Descalzo S.  2025.  Wnt/β-catenin signalling assists cell fate decision making in the early mouse embryo. bioRxiv.
2024
Vijayakumaran A, Godbehere C, Abuammar A, Breusegem SY, Hurst LR, Morone N, Llodra J, Dalbay MT, Tanvir NM, MacLellan-Gibson K. et al..  2024.  3D nanoscale architecture of the respiratory epithelium reveals motile cilia-rootlets-mitochondria axis of communication. bioRxiv.
Shiozaki HM, Wang K, Lillvis JL, Xu M, Dickson BJ, Stern DL.  2024.  Activity of nested neural circuits drives different courtship songs in Drosophila.. Nat Neurosci.
Rodríguez C, Pan D, Natan RG, Mohr MA, Miao M, Chen X, Northen TR, Vogel JP, Ji N.  2024.  Adaptive optical third-harmonic generation microscopy for in vivo imaging of tissues. bioRxiv.
Gao SMax, Qi Y, Zhang Q, Guan Y, Lee Y-T, Ding L, Wang L, Mohammed AS, Li H, Fu Y et al..  2024.  Aging atlas reveals cell-type-specific effects of pro-longevity strategies.. Nat Aging.
Selfe JS, Steyn TJS, Shorer EF, Burman RJ, Düsterwald KM, Kraitzick AZ, Abdelfattah AS, Schreiter ER, Newey SE, Akerman CJ et al..  2024.  All-optical reporting of inhibitory receptor driving force in the nervous system. Nat Commun. 15(1):8913.
Updegrove TB, Delerue T, Anantharaman V., Cho H, Chan C, Nipper T, Choo-Wosoba H, Jenkins L, Zhang L, Su Y et al..  2024.  Altruistic feeding and cell-cell signaling during bacterial differentiation actively enhance phenotypic heterogeneity. Sci Adv. 10(42):eadq0791.
Bao L, Fu L, Su Y, Chen Z, Peng Z, Sun L, Gonzalez FJ, Wu C, Zhang H, Shi B et al..  2024.  Amino acid transporter SLC7A5 regulates cell proliferation and secretary cell differentiation and distribution in the mouse intestine. Int J Biol Sci. 20(6):2187-2201.
Stringer C, Pachitariu M.  2024.  Analysis methods for large-scale neuronal recordings.. Science. 386(6722):eadp7429.
Breimann L, Bahry E, Zouinkhi M, Kolyvanov K, Street LAnnika, Preibisch S, Ercan S.  2024.  Analysis of developmental gene expression using smFISH and in silico staging of C. elegans embryos. bioRxiv.
Breimann L, Bahry E, Zouinkhi M, Kolyvanov K, Street LAnnika, Preibisch S, Ercan S.  2024.  Analysis of developmental gene expression using smFISH and in silico staging of C. elegans embryos. bioRxiv.
Man B, Kim E, Vadlakonda A, Stern DL, Crown N.  2024.  Analysis of meiotic recombination in Drosophila simulans shows heterozygous inversions do not cause an interchromosomal effect. Genetics.
Li B, Sun Q, Ding F, Xu Q, Kang N, Xue Y, Ladron-de-Guevara A, Hirase H, Weikop P, Gong S et al..  2024.  Anti-seizure effects of norepinephrine-induced free fatty acid release.. Cell Metab.
Barrero DJ, Wijeratne SS, Zhao X, Cunningham GF, Yan R, Nelson CR, Arimura Y, Funabiki H, Asbury CL, Yu Z et al..  2024.  Architecture and flexibility of native kinetochores revealed by structural studies utilizing a thermophilic yeast. Curr Biol. S0960-9822(24):00939-4.
Miura Y, Kim J-il, Jurjut O, Kelley KW, Yang X, Chen X, Thete MVijay, Revah O, Cui B, Pachitariu M et al..  2024.  Assembloid model to study loop circuits of the human nervous system. bioRxiv.
Athreya A, Xie L, Tjian R, Zhang B, Liu ZJ.  2024.  Assessing the impact of Brd2 depletion on chromatin compartmentalization. bioRxiv.
Ahrens MB, Khakh BS, Poskanzer KE.  2024.  Astrocyte Calcium Signaling. Cold Spring Harb Perspect Biol.