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4313 Publications

Showing 1571-1580 of 4313 results
04/07/26 | Fatty acid regulation of feeding in <I>Caenorhabditis</I> elegans reveals the potential ancestral origin of a GLP-1-like multiagonist signaling system.
Zhu F, Castillo-Quan JI, Ogawa T, Wu Z, Ding L, Sura M, Watanabe Y, Lentschat H, Fernández-Cárdenas LP, Dag U, Beck-Sickinger A, Wang MC, Kahn CR, Blackwell TK
Proc Natl Acad Sci U S A. 2026 Apr 07;123(14):e2530979123. doi: 10.1073/pnas.2530979123

Regulation of food intake in mammals is complex and controlled by an interplay between hedonic and homeostatic signals, including hormones like leptin, which senses fat storage and suppresses food intake. lack leptin and leptin receptors but still exhibit controlled eating. Here, we show that in eating can be regulated by a balance between saturated and monounsaturated fatty acids interacting with transcriptional pathways regulating lipid synthesis, c-AMP response element binding protein and AMP kinase. This effect is mediated at the endoplasmic reticulum through formation of phospholipids and activation of the IRE-1 sensor in the nervous system, which controls behavior through neuronal serotonin and the G-protein-coupled ligand/receptor pair PDF-1/PDFR-1. We show that this peptide/receptor pair may be an ancestral precursor of the whole family of GLP-1/GIP-related peptides and their receptors. Indeed, administration of a 37 amino acid peptide derived from PDF-1 resulted in a reduction in body weight and improved insulin sensitivity in mice. In worms, signaling through this pathway induced food-leaving behavior on concentrated food and roaming behavior on dispersed food, a state we have termed "food-apathy," paralleling pharmacologic effects of GLP-1/GIP-related peptides in humans. These findings highlight the potential evolutionary origin of this family of hormones and their receptors, and its link to metabolic and neuronal responses in control of feeding behavior.

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03/23/15 | Fatty acid trafficking in starved cells: regulation by lipid droplet lipolysis, autophagy, and mitochondrial fusion dynamics.
Rambold AS, Cohen S, Lippincott-Schwartz J
Developmental Cell. 2015 Mar 23;32(6):678-92. doi: 10.1016/j.devcel.2015.01.029

Fatty acids (FAs) provide cellular energy under starvation, yet how they mobilize and move into mitochondria in starved cells, driving oxidative respiration, is unclear. Here, we clarify this process by visualizing FA trafficking with a fluorescent FA probe. The labeled FA accumulated in lipid droplets (LDs) in well-fed cells but moved from LDs into mitochondria when cells were starved. Autophagy in starved cells replenished LDs with FAs, increasing LD number over time. Cytoplasmic lipases removed FAs from LDs, enabling their transfer into mitochondria. This required mitochondria to be highly fused and localized near LDs. When mitochondrial fusion was prevented in starved cells, FAs neither homogeneously distributed within mitochondria nor became efficiently metabolized. Instead, FAs reassociated with LDs and fluxed into neighboring cells. Thus, FAs engage in complex trafficking itineraries regulated by cytoplasmic lipases, autophagy, and mitochondrial fusion dynamics, ensuring maximum oxidative metabolism and avoidance of FA toxicity in starved cells.

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05/26/26 | Fcdnets: Surface-Graph Neural Networks for Automated Detection of Focal Cortical Dysplasia on Multi-Contrast Mri Surface Maps
Uppalapati K, Yimenicioglu B, Tsai A, Abdulkareem S, Hromek-Vaitla K, Eftekhari A
2025 IEEE MIT Undergraduate Research Technology Conference (URTC). 2026 May 26:. doi: 10.1109/URTC68753.2025.11533035

Focal cortical dysplasia (FCD) is a leading cause of drug-resistant focal epilepsy, especially in children. However, up to 30−40% of FCD lesions are “MRI-negative,” eluding visual detection on standard scans. Even expert neuroradiologists miss about one-third of these subtle lesions. Prior automated FCD detection approaches have shown promise but face important limitations. Conventional morphometry pipelines (e.g., FreeSurfer-based thickness or junction maps) rely on hand-tuned thresholds and often struggle with small cohorts and site-specific bias. Voxel-level deep learning methods, including 3D CNN and transformer models, can improve sensitivity but tend to produce excessive false positives and lack interpretability. In this work, we propose FCDNets, a graph neural network (GNN) that learns from multi-contrast MRI cortical surface maps to detect FCD lesions. Trained using only open-access MRI datasets (85 patients and 85 controls from OpenNeuro ds004199; 101 patients and 177 controls from MELD-Public), FCDNets achieves vertex-level AUROC 0.975±0.006, lesion Dice 0.64±0.12, and 82% patient sensitivity at ≤5 cm2 false-positive cortex in cross-site five-fold CV. Compared with a 3-D CNN baseline, FCDNets yields +28 percentage points higher sensitivity (82 % vs. 54 %) and 45 % fewer false-positive clusters (0.9 vs. 1.6). On MELD-Public, it maintains AUROC 0.782 and 63% sensitivity. The surface-based approach produces interpretable lesion probability maps aligned with known FCD imaging biomarkers. This open, multi-center study demonstrates the potential of surface-GNNs to aid in localizing subtle epileptogenic lesions that were previously MRIoccult, which may accelerate diagnosis and surgical treatment for drug-resistant epilepsy.

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10/09/13 | Feature detection and orientation tuning in the Drosophila central complex.
Seelig JD, Jayaraman V
Nature. 2013 Oct 9;503(7475):262-66. doi: 10.1038/nature12601

Many animals, including insects, are known to use visual landmarks to orient in their environment. In Drosophila melanogaster, behavioural genetics studies have identified a higher brain structure called the central complex as being required for the fly’s innate responses to vertical visual features and its short- and long-term memory for visual patterns. But whether and how neurons of the fly central complex represent visual features are unknown. Here we use two-photon calcium imaging in head-fixed walking and flying flies to probe visuomotor responses of ring neurons—a class of central complex neurons that have been implicated in landmark-driven spatial memory in walking flies and memory for visual patterns in tethered flying flies. We show that dendrites of ring neurons are visually responsive and arranged retinotopically. Ring neuron receptive fields comprise both excitatory and inhibitory subfields, resembling those of simple cells in the mammalian primary visual cortex. Ring neurons show strong and, in some cases, direction-selective orientation tuning, with a notable preference for vertically oriented features similar to those that evoke innate responses in flies. Visual responses were diminished during flight, but, in contrast with the hypothesized role of the central complex in the control of locomotion, not modulated during walking. Taken together, these results indicate that ring neurons represent behaviourally relevant visual features in the fly’s environment, enabling downstream central complex circuits to produce appropriate motor commands. More broadly, this study opens the door to mechanistic investigations of circuit computations underlying visually guided action selection in the Drosophila central complex.

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Card Lab
06/21/17 | Feature integration drives probabilistic behavior in the Drosophila escape response.
von Reyn CR, Nern A, Williamson WR, Breads P, Wu M, Namiki S, Card GM
Neuron. 2017 Jun 21;94(6):1190-204. doi: 10.1016/j.neuron.2017.05.036

Animals rely on dedicated sensory circuits to extract and encode environmental features. How individual neurons integrate and translate these features into behavioral responses remains a major question. Here, we identify a visual projection neuron type that conveys predator approach information to the Drosophila giant fiber (GF) escape circuit. Genetic removal of this input during looming stimuli reveals that it encodes angular expansion velocity, whereas other input cell type(s) encode angular size. Motor program selection and timing emerge from linear integration of these two features within the GF. Linear integration improves size detection invariance over prior models and appropriately biases motor selection to rapid, GF-mediated escapes during fast looms. Our findings suggest feature integration, and motor control may occur as simultaneous operations within the same neuron and establish the Drosophila escape circuit as a model system in which these computations may be further dissected at the circuit level.

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08/01/05 | Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy.
Peng H, Long F, Ding C
IEEE Transactions on Pattern Analysis and Machine Intelligence. 2005 Aug;27(8):1226-38. doi: 10.1007/s12021-010-9090-x

Feature selection is an important problem for pattern classification systems. We study how to select good features according to the maximal statistical dependency criterion based on mutual information. Because of the difficulty in directly implementing the maximal dependency condition, we first derive an equivalent form, called minimal-redundancy-maximal-relevance criterion (mRMR), for first-order incremental feature selection. Then, we present a two-stage feature selection algorithm by combining mRMR and other more sophisticated feature selectors (e.g., wrappers). This allows us to select a compact set of superior features at very low cost. We perform extensive experimental comparison of our algorithm and other methods using three different classifiers (naive Bayes, support vector machine, and linear discriminate analysis) and four different data sets (handwritten digits, arrhythmia, NCI cancer cell lines, and lymphoma tissues). The results confirm that mRMR leads to promising improvement on feature selection and classification accuracy.

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05/28/15 | Female mice ultrasonically interact with males during courtship displays.
Neunuebel JP, Taylor AL, Arthur BJ, Egnor SR
eLife. 2015 May 28;4:e06203. doi: 10.7554/eLife.06203

During courtship males attract females with elaborate behaviors. In mice, these displays include ultrasonic vocalizations. Ultrasonic courtship vocalizations were previously attributed to the courting male, despite evidence that both sexes produce virtually indistinguishable vocalizations. Because of this similarity, and the difficulty of assigning vocalizations to individuals, the vocal contribution of each individual during courtship is unknown. To address this question, we developed a microphone array system to localize vocalizations from socially interacting, individual adult mice. With this system, we show that female mice vocally interact with males during courtship. Males and females jointly increased their vocalization rates during chases. Furthermore, a female's participation in these vocal interactions may function as a signal that indicates a state of increased receptivity. Our results reveal a novel form of vocal communication during mouse courtship, and lay the groundwork for a mechanistic dissection of communication during social behavior.

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07/18/17 | Fibroblast growth factor signaling instructs ensheathing glia wrapping of olfactory glomeruli.
Wu B, Li J, Chou Y, Luginbuhl D, Luo L
Proc Natl Acad Sci U S A. 07/2017;114(29):7505-7512. doi: 10.1073/pnas.1706533114

The formation of complex but highly organized neural circuits requires interactions between neurons and glia. During the assembly of the olfactory circuit, 50 olfactory receptor neuron (ORN) classes and 50 projection neuron (PN) classes form synaptic connections in 50 glomerular compartments in the antennal lobe, each of which represents a discrete olfactory information-processing channel. Each compartment is separated from the adjacent compartments by membranous processes from ensheathing glia. Here we show that Thisbe, an FGF released from olfactory neurons, particularly from local interneurons, instructs ensheathing glia to wrap each glomerulus. The Heartless FGF receptor acts cell-autonomously in ensheathing glia to regulate process extension so as to insulate each neuropil compartment. Overexpressing Thisbe in ORNs or PNs causes overwrapping of the glomeruli their axons or dendrites target. Failure to establish the FGF-dependent glia structure disrupts precise ORN axon targeting and discrete glomerular formation.

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Cardona LabSaalfeld Lab
07/01/12 | Fiji: an open-source platform for biological-image analysis.
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez J, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A
Nature Methods. 2012 Jul;9(7):676-82. doi: 10.1038/nmeth.2019

Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software engineering practices to combine powerful software libraries with a broad range of scripting languages to enable rapid prototyping of image-processing algorithms. Fiji facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system. We propose Fiji as a platform for productive collaboration between computer science and biology research communities.

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04/20/25 | FilaBuster: A strategy for rapid, specific, and spatiotemporally controlled intermediate filament disassembly
Moore AS, Krug T, Hansen SB, Ludlow AV, Grimm JB, Ayala AX, Plutkis SE, Wang N, Goldman RD, Medalia O, Lavis LD, Weitz DA, Lippincott-Schwartz J
bioRxiv. 2025 Apr 20:. doi: 10.1101/2025.04.20.649718

Intermediate filaments (IFs) play key roles in cellular mechanics, signaling, and organization, but tools for their rapid, selective disassembly remain limited. Here, we introduce FilaBuster, a photochemical approach for efficient and spatiotemporally controlled IF disassembly in living cells. FilaBuster uses a three-step strategy: (1) targeting HaloTag to IFs, (2) labeling with a covalent photosensitizer ligand, and (3) light-induced generation of localized reactive oxygen species to trigger filament disassembly. This modular strategy applies broadly across IF subtypes—including vimentin, GFAP, desmin, peripherin, and keratin 18—and is compatible with diverse dyes and imaging platforms. Using vimentin IFs as a model system, we establish a baseline implementation in which vimentin-HaloTag labeled with a photosensitizer HaloTag ligand triggers rapid and specific IF disassembly upon light activation. We then refine this approach by (i) expanding targeting strategies to include a vimentin nanobody-HaloTag fusion, (ii) broadening the range of effective photosensitizers, and (iii) optimizing irradiation parameters to enable precise spatial control over filament disassembly. Together, these findings position FilaBuster as a robust platform for acute, selective, and spatiotemporally precise disassembly of IF networks, enabling new investigations into their structural and functional roles in cell physiology and disease.

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