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Leveraging the model-experiment loop: Examples from cellular slime mold chemotaxis.

Zhu X, Hager ER, Huyan C, Sgro AE. 2022. Leveraging the model-experiment loop: Examples from cellular slime mold chemotaxis.. Exp Cell Res. 418(1):113218.

Multimodal mapping of cell types and projections in the central nucleus of the amygdala

Wang Y, Krabbe S, Eddison M, Henry FE, Fleishman G, Lemire AL, Wang L, Korff W, Tillberg PW, Lüthi A et al.. 2023. Multimodal mapping of cell types and projections in the central nucleus of the amygdala. eLife.

Previous bioRxiv PrePrint https://doi.org/10.1101/2022.10.19.512845

Spatial organization of the 3D genome encodes gene co-expression programs in single cells

Dong P, Zhang S, Xie L, Wang L, Lemire AL, Lander AD, Chang HY, Liu ZJ. 2022. Spatial organization of the 3D genome encodes gene co-expression programs in single cells. bioRxiv.

Previous bioRxiv PrePrint https://doi.org/10.1101/2022.10.26.513917

De novo protein identification in mammalian sperm using high-resolution in situ cryo-electron tomography

Chen Z, Shiozaki M, Haas KM, Zhao S, Guo C, Polacco BJ, Yu Z, Krogan NJ, Kaake RM, Vale RD et al.. 2023. De novo protein identification in mammalian sperm using high-resolution in situ cryo-electron tomography. Cell. 186(23):5041-5053.e19.

bioRxiv PrePrint https://doi.org/10.1101/2022.09.28.510016

Facemap: a framework for modeling neural activity based on orofacial tracking

Syeda A, Zhong L, Tung R, Long W, Pachitariu M, Stringer C. 2023. Facemap: a framework for modeling neural activity based on orofacial tracking. Nature Neuroscience.

Previous bioRxiv PrePrint https://doi.org/10.1101/2022.11.03.515121

Cellpose 2.0: how to train your own model.

Pachitariu M, Stringer C. 2022. Cellpose 2.0: how to train your own model.. Nature Methods. 19(12):1634-41.

bioRxiv PrePrint https://doi.org/10.1101/2022.04.01.486764

Chemically stable fluorescent proteins for advanced microscopy.

Campbell BC, Paez-Segala MG, Looger LL, Petsko GA, Liu CFeng. 2022. Chemically stable fluorescent proteins for advanced microscopy.. Nature Methods. 19(12):1612-21.

Cap-dependent translation initiation monitored in living cells.

Gandin V, English BP, Freeman M, Leroux L-P, Preibisch S, Walpita D, Jaramillo M, Singer RH. 2022. Cap-dependent translation initiation monitored in living cells.. Nature Communications. 13(1):6558.

Cytoplasmic tyrosine phosphatase Shp2 coordinates hepatic regulation of bile acid and FGF15/19 signaling to repress bile acid synthesis.

Li S, Hsu DDF, Li B, Luo X, Alderson N, Qiao L, Ma L, Zhu HH, He Z, Suino-Powell K et al.. 2014. Cytoplasmic tyrosine phosphatase Shp2 coordinates hepatic regulation of bile acid and FGF15/19 signaling to repress bile acid synthesis.. Cell Metab. 20(2):320-32.

NAD⁺/NADH metabolism and NAD⁺-dependent enzymes in cell death and ischemic brain injury: current advances and therapeutic implications.

Ma Y, Nie H, Chen H, Li J, Hong Y, Wang B, Wang C, Zhang J, Cao W, Zhang M et al.. 2015. NAD⁺/NADH metabolism and NAD⁺-dependent enzymes in cell death and ischemic brain injury: current advances and therapeutic implications.. Curr Med Chem. 22(10):1239-47.