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2025
Hu G, Savini M, Cooke MBrandon, Wei X, Deng D, Gao SM, Xia RAlps, Guan Y, Wen AX, Yu X et al..  2025.  Chemical modulation of gut bacterial metabolism induces colanic acid and extends the lifespan of nematode and mammalian hosts.. PLoS Biol. 23(11):e3002749.
Fukaya Y, Yoshikawa M, Aoki K, Farrants H, Johnsson K, Tsukiji S.  2025.  A chemically switchable synthetic condensate platform for reversible protein sequestration and release. ACS Chem Biol.
Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al..  2025.  Chromatix: A differentiable, GPU-accelerated wave-optics library. Nat Methods.
Glendening AM, Stephens C, Vuruputoor VS, Chaganti T, Myles MN, Stern DL, Abdelalim M, Juang Y-P, Hogenhout SA, Mathers TC et al..  2025.  Chromosome scale genomes of two invasive Adelges species enable virtual screening for selective adelgicides.. G3 (Bethesda). 16(1)
Bulanchuk P, Koay SAnn, Romani S.  2025.  A Class of Markovian self-reinforcing processes with power-law distributions. arXiv.
Csillag V, Forastieri C, Szücs GMartina, Vidal ITalaya, Bizzozzero MHiriart, Lavis LD, Calvigioni D, Fuzik J.  2025.  Collateral connectomes of Esr1-positive hypothalamic neurons modulate defensive behavior plasticity. bioRxiv.
Park SYun, Sheridan A, An B, Jarvis E, Lyudchik J, Patton W, Axup JY, Chan SW, Damstra HGJ, Leible D et al..  2025.  Combinatorial protein barcodes enable self-correcting neuron tracing with nanoscale molecular context. bioRxiv.
Pentimalli TMassimo, Schallenberg S, León-Periñán D, Legnini I, Theurillat I, Thomas G, Boltengagen A, Fritzsche S, Nimo J, Ruff L et al..  2025.  Combining spatial transcriptomics and ECM imaging in 3D for mapping cellular interactions in the tumor microenvironment.. Cell Syst. :101261.
Stürner T, Brooks P, Capdevila LSerratosa, Morris BJ, Javier A, Fang S, Gkantia M, Cachero S, Beckett IR, Marin EC et al..  2025.  Comparative connectomics of Drosophila descending and ascending neurons.. Nature.
Reyna-Neyra A, Pandya RD, Lackner EM, Pang S, Li W-P, C. Xu S, Zugates C, Burdyniuk M, Pandya VD, Weisz OA et al..  2025.  Compartmentalization of the endoplasmic reticulum in mouse kidney proximal tubule epithelial cells. Physiology. 40:1280.
Erginkaya M, Cruz T, Brotas M, Steck K, Nern A, Torrão F, Varela N, Bock D, Reiser M, M Chiappe E.  2025.  A competitive disinhibitory network for robust optic flow processing in Drosophila. Nat Neurosci..
Cai C, Traubert O, Tormes-Vaquerano J, M Eybposh H, Turaga SC, Rodriguez-Romaguera J, Naumann EA, Pégard NC.  2025.  Compressive streak microscopy for fast sampling of fluorescent reporters of neural activity.. Neurophotonics. 12(2):025013.
Park J, Polidoro P, Fortunato C, Arnold J, Mensh B, Gallego JA, Dudman JT.  2025.  Conjoint specification of action by neocortex and striatum. Neuron.
Yin Y, Hoeller J, Mathiasen A, Tsang J, Charrier MEstelle, Cardona A.  2025.  The connectome interpreter toolkit. bioRxiv.
Petkova MD, Januszewski M, Blakely T, Herrera KJ, Schuhknecht GFP, Tiller R, Choi J, Schalek RL, Boulanger-Weill J, Peleg A et al..  2025.  A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. bioRxiv.
Lin H, Yang B, Ding L, Yang Y-Y, Holt MV, Jung SYun, Zhang B, Wang MC, Wang J.  2025.  COOKIE-Pro: covalent inhibitor binding kinetics profiling on the proteome scale.. Nat Commun. 16(1):8373.
Keller JA, Kwak IS, Stark AK, Pachitariu M, Branson K, Dudman JT.  2025.  Cortical control of innate behavior from subcortical demonstration. bioRxiv.
Lollar MJ, Kim E, Stern DL, Pool JE.  2025.  Courtship song differs between African and European populations of Drosophila melanogaster and involves a strong effect locus. G3 Genes|Genomes|Genetics.
Roberts R, Giez C, Dhawan S, Pang S, Randel N, Zhiyuan L, Gong H, Dekens L, DiFrisco J, C Xu S et al..  2025.  Cross-species comparative connectomics reveals the evolution of an olfactory circuit. bioRxiv.
Guan Y, Yu Y, Gao SMax, Ding L, Zhao Q, Wang M.  2025.  Cross-Tissue Coordination between SLC Nucleoside Transporters Regulates Reproduction in Caenorhabditis elegans. PLoS Genet.
Uryu K, Zhao X, Shiozaki M, Yu Z.  2025.  Cryo-electron Microscopy of Vitreous Sections (CEMOVIS) application for model organisms. Microscopy and Microanalysis. 31(1(Supp)):ozaf048.484.
Zocchi D, Nguyen M, Marquez-Legorreta E, Siwanowicz I, Singh C, Prober DA, Hillman EMC, Ahrens MB.  2025.  Days-old zebrafish rapidly learn to recognize threatening agents through noradrenergic and forebrain circuits.. Curr Biol. 35(1):163-176.e4.
Guo M, Wu Y, Hobson CM, Su Y, Qian S, Krueger E, Christensen R, Kroeschell G, Bui J, Chaw M et al..  2025.  Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopyAbstract. Nature Communications. 16(1)
Schneider MC, Johnson C, Allier C, Heinrich L, Adjavon D, Husic J, La Riviere P, Saalfeld S, Shroff H.  2025.  DeepPD: Joint phase and object estimation from phase diversity with neural calibration of a deformable mirror. arXiv.
Gandin V, Kim J, Yang L-Z, Lian Y, Kawase T, Hu A, Rokicki K, Fleishman G, Tillberg P, Castrejon AAguilera et al..  2025.  Deep-tissue transcriptomics and subcellular imaging at high spatial resolution. Science.