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Project Teams:
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Invertebrate Shared Resource
- Janelia Experimental Technology
- Mass Spectrometry
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing Software
- Scientific Computing Systems
- Viral Tools
- Vivarium
2021
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2021. Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.. Nature Methods. 18(12):1427-1440.
Ma D, Przybylski D, Abruzzi KC, Schlichting M, Li Q, Long X, Rosbash M.
2021. A transcriptomic taxonomy of circadian neurons around the clock.. eLife. 10
Sun Y, Yu Z, Obara C, Mittal K, Lippincott-Schwarz J, Koslover EF.
2021. Unraveling Single-Particle Trajectories Confined in Tubular Networks. arXiv.
Hückesfeld S, Schlegel P, Miroschnikow A, Schoofs A, Zinke I, Haubrich AN, Schneider-Mizell CM, Truman JW, Fetter RD, Cardona A et al..
2021. Unveiling the sensory and interneuronal pathways of the neuroendocrine connectome in Drosophila.. eLife. 10
Ghilardi SJ, Aronson MS, Sgro AE.
2021. Ventral stress fibers induce plasma membrane deformation in human fibroblasts.. Mol Biol Cell. 32(18):1707-1723.
Gautier A, Jullien L, Li C, Plamont M-A, Tebo AG, Thauvin M, Volovitch M, Vriz S.
2021. Versatile On-Demand Fluorescent Labeling of Fusion Proteins Using Fluorescence-Activating and Absorption-Shifting Tag (FAST).. Methods Mol Biol. 2350:253-265.
Hobson CM, Aaron JS, Heddleston JM, Chew T-L.
2021. Visualizing the Invisible: Advanced Optical Microscopy as a Tool to Measure Biomechanical Forces.. Frontiers in Cell and Developmental Biology. 9:706126.
Cai C, Friedrich J, Singh A, M Eybposh H, Pnevmatikakis EA, Podgorski K, Giovannucci A.
2021. VolPy: Automated and scalable analysis pipelines for voltage imaging datasets.. PLoS Computational Biology. 17(4):e1008806.
Lundberg E, Funke J, Uhlmann V, Gerlich D, Walter T, Carpenter A, Coehlo LPedro.
2021. Which image-based phenotypes are most promising for using AI to understand cellular functions and why? Cell Systems. 12(5):384-387.
Heinrich L, Bennett D, Ackerman D, Park W, Bogovic J, Eckstein N, Petruncio A, Clements J, Pang S, C Xu S et al..
2021. Whole-cell organelle segmentation in volume electron microscopy.. Nature. 599(7883):141-46.
Feliciano D, Ott CM, Espinosa Medina I, Weigel AV, Benedetti L, Milano KM, Tang Z, Lee T, Kliman HJ, Guller SM et al..
2021. YAP1 nuclear efflux and transcriptional reprograming follow membrane diminution upon VSV-G-induced cell fusion.. Nature Communications. 12(1):4502.
2020
Xie L, Dong P, Chen X, Hsieh T-HS, Banala S, De Marzio M, English BP, Qi Y, Jung SKyoung, Kieffer-Kwon K-R et al..
2020. 3D ATAC-PALM: super-resolution imaging of the accessible genome.. Nature Methods. 17(4):430-6.
Hubbard PM, Berg S, Zhao T, Olbris DJ, Umayam L, Maitin-Shepard J, Januszewski M, Katz WT, Neace ER, Plaza SM.
2020. Accelerated EM Connectome Reconstruction using 3D Visualization and Segmentation Graphs. bioRxiv.
Jonker CTH, Deo C, Zager PJ, Tkachuk AN, Weinstein AM, Rodriguez-Boulan E, Lavis LD, Schreiner R.
2020. Accurate measurement of fast endocytic recycling kinetics in real time.. Journal of Cell Science. 133(2)
Schiavon CR, Zhang T, Zhao B, Moore AS, Wales P, Andrade LR, Wu M, Sung T-C, Dayn Y, Feng JW et al..
2020. Actin chromobody imaging reveals sub-organellar actin dynamics.. Nature Methods. 17(9):917-21.
Jackson J, Smith JB, Lee AK.
2020. The anatomy and physiology of claustrum-cortex interactions.. Annual Review of Neuroscience. 43:231-47.
Schröder S, Steinmetz NA, Krumin M, Pachitariu M, Rizzi M, Lagnado L, Harris KD, Carandini M.
2020. Arousal modulates retinal output.. Neuron. 107(3):487.
Sten THindmarsh, Li R, Otopalik A, Ruta V.
2020. An arousal-gated visual circuit controls pursuit during Drosophila courtship. bioRxiv.
Garcia-Marques J, Espinosa Medina I, Lee T.
2020. The art of lineage tracing: from worm to human.. Progress in Neurobiology. :101966.
Bai X, Melesse M, Turpin CGSorensen, Sloan D, Chen C-Y, Wang W-C, Lee P-Y, Simmons JR, Nebenfuehr B, Mitchell D et al..
2020. Aurora B functions at the apical surface after specialized cytokinesis during morphogenesis in C. elegans.. Development. 147(1):1-16.
Park J, Coddington LT, Dudman JT.
2020. Basal ganglia circuits for action specification.. Annual Review Neuroscience. 43:485-507.
Lu J, Doyle AD, Shinsato Y, Wang S, Bodendorfer MA, Zheng M, Yamada KM.
2020. Basement Membrane Regulates Fibronectin Organization Using Sliding Focal Adhesions Driven by a Contractile Winch. Developmental Cell. 52:631-646.e4.