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3D FIB-SEM Publications

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3D FIB-SEM Publications
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11/27/19 | En bloc preparation of Drosophila brains enables high-throughput FIB-SEM connectomics.

Zhiyuan Lu, C. Shan Xu, Kenneth J. Hayworth, Patricia Rivlin, Stephen M. Plaza, Louis Scheffer, Gerald M. Rubin, Harald F. Hess, Ian A. Meinertzhagen​​​
BioRxiv 855130. 2019 November 27  doi: 10.1101/855130

11/25/19 | Enabling FIB-SEM Systems for Large Volume Connectomics and Cell Biology.

C. Shan Xu, Song Pang, Kenneth J. Hayworth, Harald F. Hess​​​
BioRxiv 852863. 2019 November 25  doi: 10.1101/852863

6/21/19 | Spastin tethers lipid droplets to peroxisomes and directs fatty acid trafficking through ESCRT-III.

Chi-Lun Chang, Aubrey V. Weigel, Maria S. Ioannou, H. Amalia Pasolli, C. Shan Xu, David R. Peale, Gleb Shtengel, Melanie Freeman, Harald F. Hess, Craig Blackstone, Jennifer Lippincott-Schwartz​​​
Journal of Cell Biology. 2019 June 21;218 (8): 2583. doi: 10.1083/jcb.201902061

5/30/19 | Neuron-astrocyte metabolic coupling protects against activity-induced fatty acid toxicity.

Ioannou MS, Jackson J, Sheu S, Chang C, Weigel AV, Liu H, Pasolli HA, Xu CS, Pang S, Matthies D, Hess HF, Lippincott-Schwartz J, Liu Z​​​
Cell. 2019 May 30;177(6):1522-1535.e14. doi: 10.1016/j.cell.2019.04.001

1/18/19 | Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution.

Ruixuan Gao, Shoh M. Asano1, Srigokul Upadhyayula, Igor Pisarev, Daniel E. Milkie, Tsung-Li Liu, Ved Singh, Austin Graves, Grace H. Huynh, Yongxin Zhao, John Bogovic, Jennifer Colonell, Carolyn M. Ott, Christopher Zugates, Susan Tappan, Alfredo Rodriguez, Kishore R. Mosaliganti, Shu-Hsien Sheu, H. Amalia Pasolli, Song Pang, C. Shan Xu, Sean G. Megason, Harald Hess, Jennifer Lippincott-Schwartz, Adam Hantman, Gerald M. Rubin, Tom Kirchhausen, Stephan Saalfeld, Yoshinori Aso, Edward S. Boyden, Eric Betzig​​​
Science (New York, N.Y.). 2019 Jan 18;363(6424):eaau8302. doi: 10.1126/science.aau8302

11/09/18 | Comparisons between the ON- and OFF-edge motion pathways in the brain.

Shinomiya K, Huang G, Lu Z, Parag T, Xu C.Shan, Aniceto R, Ansari N, Cheatham N, Lauchie S, Neace E, Ogundeyi O, Ordish C, Peel D, Shinomiya A, Smith C, Takemura S, Talebi I, Rivlin PK, Nern A, Scheffer LK, Plaza SM, Meinertzhagen IA​
eLife. 2019 Jan 09;8:. doi:10.7554/eLife.40025

11/01/18 | A Resource for the antennal lobe provided by the connectome of glomerulus VA1v.

Home JA, Langille C, McLin S, Wiederman M, Lu Z, Xu C.Shan, Plaza SM, Scheffer LK, Hess HF, Meinertzhagen IA​
eLife. 2018 Nov 01;7:. doi:10.7554/eLife.37550

07/24/18 | The ESCRT-III Protein CHMP1A Mediates Secretion of Sonic Hedgehog on a Distinctive Subtype of Extracellular Vesicles.

Michael E. Coulter, Cristina M.Dorobantu, Gerrald A.Lodewijk, Francois Delalande, Sarah Cianferani, Vijay S.Ganesh, Richard S.Smith, Elaine T.Lim, C.Shan Xu, Song Pang, Eric T.Wong, Hart G.W.Lidov Monica L.Calicchio, Edward Yang, Dilenny M.Gonzalez, Thorsten M.Schlaeger, Ganeshwaran H.Mochida, Harald Hess, Christopher A.Walsh
Cell Reports. 2018 Jul 24;24(4):973-986.e8. doi:10.1016/j.celrep.2018.06.100 

04/25/18 | A novel sheet-like virus particle array is a hallmark of Zika virus infection.

Liu J, Kline BA, Kenny TA, Smith DR, Soloveva V, Beitzel B, Pang S, Lockett S, Hess HF, Palacios G, Kuhn JH, Sun MG, Zeng X 
Emerging Microbes & Infections. 2018 Apr 25;7(1):69. doi: 10.1038/s41426-018-0071-8

07/18/17 | A connectome of a learning and memory center in the adult Drosophila brain.

Takemura S, Aso Y, Hige T, Wong AM, Lu Z, Xu C.Shan, Rivlin PK, Hess HF, Zhao T, Parag T, Berg S, Huang G, Katz WT, Olbris DJ, Plaza SM, Umayam LA, Aniceto R, Chang L, Lauchie S, et al 
eLife. 2017 Jul 18;6:. doi: 10.7554/eLife: 26975

05/30/17 | Contacts between the endoplasmic reticulum and other membranes in neurons. 

Wu Y, Whiteus C, Xu C.Shan, Hayworth KJ, Weinberg RJ, Hess HF, De Camilli P
Proceedings of the National Academy of Sciences of the United States of America. 2017 May 30:. doi: 10.1073/pnas.1701078114

Xu C.Shan, Hayworth KJ, Lu Z, Grob P, Hassan AM, García-Cerdán JG, Niyogi KK, Nogales E, Weinberg RJ, Hess HF
eLife. 2017 May 13;6:. doi: 10.7554/eLife: 25916
Nature Methods. 2017 June 29; 14, 653 (2017):. doi: 10.1038/nmeth.4349
Jonathon Nixon-Abell
Christopher J. Obara
Aubrey V. Weigel,
Dong Li
Wesley R. Legant,  
C. Shan Xu
H. Amalia Pasolli,  
Kirsten Harvey,  
Harald F. Hess,  
Eric Betzig
Craig Blackstone,  
Jennifer Lippincott-Schwartz
Sciences (New York, N.Y.) 2016 Oct 28; 354(6311): 433-46
Takemura S, Xu C.Shan, Lu Z, Rivlin PK, Parag T, Olbris DJ, Plaza S, Zhao T, Katz WT, Umayam L, Weaver C, Hess HF, Horne JAnne, Nunez-Iglesias J, Aniceto R, Chang L, Lauchie S, Nasca A, Ogundeyi O, Sigmund C, Takemura S, Tran J, Langille C, Le Lacheur K, McLin S, Shinomiya A, Chklovskii DB, Meinertzhagen IA, Scheffer LK
Proceedings of the National Academy of Sciences of the United States of America. 2015 Nov 3;112(44):13711-6. doi: 10.1073/pnas.1509820112

02/16/15 | Ultrastructurally smooth thick partitioning and volume stitching for large-scale connectomics.
Hayworth KJ, Xu C.Shan, Lu Z, Knott GW, Fetter RD, Tapia JCarlos, Lichtman JW, Hess HF
Nature Methods. 2015 Feb 16:. doi: 10.1038/nmeth.3292

08/02/13 | Electron microscopy reconstruction of brain structure using sparse representations over learned dictionaries.
Hu T, Nunez-Iglesias J, Vitaladevuni S, Scheffer L, Xu C.Shan, Bolorizadeh M, Hess H, Fetter R, Chklovskii D
IEEE Transactions on Medical Imaging. 2013 Aug 2;32(12):2179-88. doi: 10.1109/TMI.2013.2276018
10/01/12 | Super-resolution using sparse representations over learned dictionaries: reconstruction of brain structure using electron microscopy.
Hu T, Nunez-Iglesias J, Vitaladevuni S, Scheffer L, Xu C.Shan, Bolorizadeh M, Hess H, Fetter R, Chklovskii D
arXiv.org . 2012 Oct:

01/01/11 | High resolution segmentation of neuronal tissues from low depth-resolution EM imagery.   Glasner D, Hu T, Nunez-Iglesias J, Scheffer L, Xu C.Shan, Hess H, Fetter R, Chklovskii D, Basri R. 8th International Conference of Energy Minimization Methods in Computer Vision and Pattern Recognition Energy Minimization Methods in Computer Vision and Pattern Recognition. 2011;6819:261-72

Knott G, Marchman H, Wall D, Lich B
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 2008 Mar 19;28(12):2959-64. doi: 10.1523/JNEUROSCI.3189-07.2008