| Page 4 | Janelia Research Campus

Chromatix: a differentiable, GPU-accelerated wave-optics library

Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al.. 2025. Chromatix: a differentiable, GPU-accelerated wave-optics library. bioRxiv.

Cellpose-SAM: superhuman generalization for cellular segmentation

Pachitariu M, Rariden M, Stringer C. 2025. Cellpose-SAM: superhuman generalization for cellular segmentation. bioRxiv.

Molecular organization of central cholinergic synapses.

Rosenthal JS, Zhang D, Yin J, Long C, Yang G, Li Y, Lu Z, Li W-P, Yu Z, Li J et al.. 2025. Molecular organization of central cholinergic synapses.. Proc Natl Acad Sci U S A. 122(17):e2422173122.

Comparative connectomics of Drosophila descending and ascending neurons.

Stürner T, Brooks P, Capdevila LSerratosa, Morris BJ, Javier A, Fang S, Gkantia M, Cachero S, Beckett IR, Marin EC et al.. 2025. Comparative connectomics of Drosophila descending and ascending neurons.. Nature.

DeepPD: Joint Phase and Object Estimation from Phase Diversity with Neural Calibration of a Deformable Mirror

Schneider MC, Johnson C, Allier C, Heinrich L, Adjavon D, Husic J, La Riviere P, Saalfeld S, Shroff H. 2025. DeepPD: Joint Phase and Object Estimation from Phase Diversity with Neural Calibration of a Deformable Mirror. arXiv.

FilaBuster: A Strategy for Rapid, Specific, and Spatiotemporally Controlled Intermediate Filament Disassembly

Moore AS, Krug T, Hansen SB, Ludlow AV, Grimm JB, Ayala AX, Plutkis SE, Wang N, Goldman RD, Medalia O et al.. 2025. FilaBuster: A Strategy for Rapid, Specific, and Spatiotemporally Controlled Intermediate Filament Disassembly. bioRxiv.

Abstract 2420: Deep learning enables automated detection of circulating tumor cell-immune cell interactions with prognostic insights in cancer

Sun Y, Squires JR, Hoffmann A, Zhang Y, Minor A, Singh A, Scholten D, Mao C, Luo Y, Fang D et al.. 2025. Abstract 2420: Deep learning enables automated detection of circulating tumor cell-immune cell interactions with prognostic insights in cancer. Cancer Research. 85:2420-2420.

Mitochondrial complexity is regulated at ER-mitochondria contact sites via PDZD8-FKBP8 tethering.

Nakamura K, Aoyama-Ishiwatari S, Nagao T, Paaran M, Obara CJ, Sakurai-Saito Y, Johnston J, Du Y, Suga S, Tsuboi M et al.. 2025. Mitochondrial complexity is regulated at ER-mitochondria contact sites via PDZD8-FKBP8 tethering.. Nat Commun. 16(1):3401.

Glutamate indicators with increased sensitivity and tailored deactivation rates

Podgorski K, Aggarwal A, Negrean A, Chen Y, Iyer R, Reep D, Liu A, Palutla A, Xie M, Maclennan B et al.. 2025. Glutamate indicators with increased sensitivity and tailored deactivation rates. Research Square.

Wnt/β-catenin signalling assists cell fate decision making in the early mouse embryo

Lilao-Garzón J, Corujo-Simon E, Vinyoles M, Fischer SC, Guillén J, Balayo T, Muñoz-Descalzo S. 2025. Wnt/β-catenin signalling assists cell fate decision making in the early mouse embryo. bioRxiv.