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Labs:
Project Teams:
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Fly Facility
- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Janelia Experimental Technology
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing Software
- Scientific Computing Systems
- Viral Tools
- Vivarium
2024
Chen S, Liu Y, Wang ZAiden, Colonell J, Liu LD, Hou H, Tien N-W, Wang T, Harris T, Druckmann S et al..
2024. Brain-wide neural activity underlying memory-guided movement.. Cell. 187(3):676-691.e16.
2023
Kim CM, Finkelstein A, Chow CC, Svoboda K, Darshan R.
2023. Distributing task-related neural activity across a cortical network through task-independent connections.. Nature Communications. 14(1):2851.
Zhang Y, Rozsa M, Liang Y, Bushey D, Wei Z, Zheng J, Reep D, Broussard GJoey, Tsang A, Tsegaye G et al..
2023. Fast and sensitive GCaMP calcium indicators for imaging neural populations.. Nature.
Covert I, Gala R, Wang T, Svoboda K, Sümbül U, Lee S-I.
2023. Predictive and robust gene selection for spatial transcriptomics.. Nature Communications. 14(1):2091.
Abdelfattah AS, Zheng J, Singh A, Huang Y-C, Reep D, Tsegaye G, Tsang A, Arthur BJ, Rehorova M, Olson CVL et al..
2023. Sensitivity optimization of a rhodopsin-based fluorescent voltage indicator. Neuron. 111(10):1547-1563.
2022
Inagaki HK, Chen S, Ridder MC, Sah P, Li N, Yang Z, Hasanbegovic H, Gao Z, Gerfen CR, Svoboda K.
2022. A midbrain-thalamus-cortex circuit reorganizes cortical dynamics to initiate movement.. Cell. 185(8):1065.
Inagaki HK, Chen S, Daie K, Finklestein A, Fontolan L, Romani S, Svoboda K.
2022. Neural Algorithms and Circuits for Motor Planning.. Annual Reviews Neuroscience.
Inagaki HK, Chen S, Daie K, Finkelstein A, Fontolan L, Romani S, Svoboda K.
2022. Neural Algorithms and Circuits for Motor Planning.. Annual Review Neuroscience. 45:249-271.
2021
Liu LD, Chen S, Economo MN, Li N, Svoboda K.
2021. Accurate localization of linear probe electrodes across multiple brains.. eNeuro. 8(6):ENEURO.0241-21.2021.
Finkelstein A, Fontolan L, Economo MN, Li N, Romani S, Svoboda K.
2021. Attractor dynamics gate cortical information flow during decision-making.. Nature Neuroscience. 24(6):843-50.
Wang Y, Eddison M, Fleishman G, Weigert M, Xu S, Wang T, Rokicki K, Goina C, Henry FE, Lemire AL et al..
2021. EASI-FISH for thick tissue defines lateral hypothalamus spatio-molecular organization.. Cell. 184(26):6361.
Xie ME, Adam Y, Fan LZ, Böhm UL, Kinsella I, Zhou D, Rozsa M, Singh A, Svoboda K, Paninski L et al..
2021. High-fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo.. Cell Reports. 35(1):108954.
Steinmetz NA, Aydın Ç, Lebedeva A, Okun M, Pachitariu M, Bauza M, Beau M, Bhagat J, Böhm C, Broux M et al..
2021. Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings.. Science. 372(6539)
Daie K, Svoboda K, Druckmann S.
2021. Targeted photostimulation uncovers circuit motifs supporting short-term memory.. Nature Neuroscience. 24(2):259-265.
2020
Wei Z, Lin B-J, Chen T-W, Daie K, Svoboda K, Druckmann S.
2020. A comparison of neuronal population dynamics measured with calcium imaging and electrophysiology.. PLoS Computational Biology. 16(9):e1008198.
Molina RS, King J, Franklin J, Clack N, McRaven C, Goncharov V, Flickinger D, Svoboda K, Drobizhev M, Hughes TE.
2020. High throughput instrument to screen fluorescent proteins under two-photon excitation.. Biomedical Optics Express. 11(12):7192-7203.
Abbott LF, Bock DD, Callaway EM, Denk W, Dulac C, Fairhall AL, Fiete I, Harris KM, Helmstaedter M, Jain V et al..
2020. The mind of a mouse.. Cell. 182(6):1372-1376.
Lu R, Liang Y, Meng G, Zhou P, Svoboda K, Paninski L, Ji N.
2020. Rapid mesoscale volumetric imaging of neural activity with synaptic resolution.. Nature Methods. 17(3):291-4.
Peron S, Pancholi R, Voelcker B, Wittenbach JD, H Ólafsdóttir F, Freeman J, Svoboda K.
2020. Recurrent interactions in local cortical circuits.. Nature. 579(7798):256-59.
2019
Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang Y-C, Campagnola L, Seeman SC, Yu J et al..
2019. Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.. Science. 365(6454):699-704.
Inagaki HK, Fontolan L, Romani S, Svoboda K.
2019. Discrete attractor dynamics underlies persistent activity in the frontal cortex.. Nature. 566(7743):212-7.
Kerlin A, Boaz M, Flickinger D, MacLennan BJ, Dean MB, Davis C, Spruston N, Svoboda K.
2019. Functional clustering of dendritic activity during decision-making.. Elife. 8
Dana H, Sun Y, Mohar B, Hulse BK, Kerlin AM, Hasseman JP, Tsegaye G, Tsang A, Wong A, Patel R et al..
2019. High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.. Nature Methods. 16(7):649-57.
Rubel O, Tritt A, Dichter B, Braun T, Cain N, Clack NG, Davidson TJ, Dougherty M, Fillion-Rubin J-C, Graddis N et al..
2019. NWB:N 2.0: An accessible data standard for neurophysiology.. bioRxiv.