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Author Title Type [ Year(Asc)]
Filters: Author is Peng, Hanchuan  [Clear All Filters]
2023
Manubens-Gil L, Zhou Z, Chen H, Ramanathan A, Liu X, Liu Y, Bria A, Gillette T, Ruan Z, Yang J et al..  2023.  BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets.. Nature Methods. 20(6)
2015
Peng H, Hawrylycz M, Roskams J, Hill S, Spruston N, Meijering E, Ascoli GA.  2015.  BigNeuron: Large-scale 3D neuron reconstruction from optical microscopy images.. Neuron. 87:252-6.
Wan Y, Long F, Qu L, Xiao H, Hawrylycz M, Myers EW, Peng H.  2015.  BlastNeuron for automated comparison, retrieval and clustering of 3D neuron morphologies.. Neuroinformatics. 13(4):487-99.
Li X, Zhou Z, Keller PJ, Zeng H, Liu T, Peng H.  2015.  Interactive exemplar-based segmentation toolkit for biomedical image analysis.. International Symposium on Biomedical Imaging.
2014
Heckscher ES, Long F, Layden MJ, Chuang C-H, Manning L, Richart J, Pearson JC, Crews ST, Peng H, Myers E et al..  2014.  Atlas-builder software and the eNeuro atlas: resources for developmental biology and neuroscience.. Development. 141(12):2524-32.
Peng H, Tang J, Xiao H, Bria A, Zhou J, Butler V, Zhou Z, Gonzalez-Bellido PT, Oh SW, Chen J et al..  2014.  Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis.. Nature Communications. 5:4342.
Rivera-Alba M, Peng H, de Polavieja GG, Chklovskii DB.  2014.  Wiring economy can account for cell body placement across species and brain areas.. Current biology : CB. 24:R109-10.
2013
Xiao H, Peng H.  2013.  APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree.. Bioinformatics (Oxford, England). 29:1448-54.
Yu H-H, Awasaki T, Schroeder MDavid, Long F, Yang JS, He Y, Ding P, Kao J-C, Wu GYueh-Yi, Peng H et al..  2013.  Clonal development and organization of the adult Drosophila central brain.. Current biology : CB. 23:633-43.
Yang J, Gonzalez-Bellido PT, Peng H.  2013.  A distance-field based automatic neuron tracing method.. BMC Bioinformatics. 14:93.
Gonzalez-Bellido PT, Peng H, Yang J, Georgopoulos AP, Olberg RM.  2013.  Eight pairs of descending visual neurons in the dragonfly give wing motor centers accurate population vector of prey direction.. Proceedings of the National Academy of Sciences of the United States of America. 110(2):696-701.
2012
Peng H, Bateman A, Valencia A, Wren JD.  2012.  Bioimage informatics: a new category in Bioinformatics.. Bioinformatics. 28(8):1057.
Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B et al..  2012.  Biological imaging software tools.. Nature Methods. 9(7):697-710.
Jenett A, Rubin GM, Ngo T-TB, Shepherd D, Murphy C, Dionne H, Pfeiffer BD, Cavallaro A, Hall D, Jeter J et al..  2012.  A GAL4-driver line resource for Drosophila neurobiology.. Cell Reports. 2(4):991-1001.
Kim J, Zhao T, Petralia RS, Yu Y, Peng H, Myers E, Magee JC.  2012.  mGRASP enables mapping mammalian synaptic connectivity with light microscopy.. Nature Methods. 9:96-102.
Long F, Zhou J, Peng H.  2012.  Visualization and analysis of 3D microscopic images.. PLoS Computational Biology. 8:e1002519.
2011
Xie J, Zhao T, Lee T, Myers E, Peng H.  2011.  Anisotropic path searching for automatic neuron reconstruction.. Medical Image Analysis. 15:680-9.
Yu Y, Peng H.  2011.  Automated high speed stitching of large 3D microscopic images.. 2011 8TH IEEE International Symposium on Biomedical Imaging: From Nano to Macro. :238-41.
Zhao T, Xie J, Amat F, Clack N, Ahammad P, Peng H, Long F, Myers E.  2011.  Automated reconstruction of neuronal morphology based on local geometrical and global structural models.. Neuroinformatics. 9(2-3):247-61.
Long F, Peng H, Myers E.  2011.  Automatic 3D neuron tracing using all-paths pruning.. Conference on Intelligent Systems for Molecular Biology.
Peng H, Chung P, Long F, Qu L, Jenett A, Seeds AM, Myers EW, Simpson JH.  2011.  BrainAligner: 3D registration atlases of Drosophila brains.. Nature Methods. 8:493-500.
Peng H, Long F, Zhao T, Myers E.  2011.  Proof-editing is the bottleneck of 3D neuron reconstruction: the problem and solutions.. Neuroinformatics. 9:103-5.
Qu L, Long F, Liu X, Kim S, Myers E, Peng H.  2011.  Simultaneous recognition and segmentation of cells: application in C. elegans.. Bioinformatics. 27(20):2895-902.
2010
Xie J, Zhao T, Lee T, Myers E, Peng H.  2010.  Automatic neuron tracing in volumetric microscopy images with anisotropic path searching.. Medical Image Computing and Computer-Assisted Intervention: MICCAI International Conference on Medical Image Computing and Computer-Assisted Intervention. 13:472-9.
Peng H, Ruan Z, Atasoy D, Sternson S.  2010.  Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model.. Bioinformatics. 26:i38-46.