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2026
Lim J-X, Wei Z, Narayan S, Zhang Y, Hasseman JP, Kolb I, Zheng J, Sheikhattar A, Mi X, Zheng W et al..  2026.  Astrocyte-induced internal state transitions reshape brainwide sensory, integrative, and motor computations. bioRxiv.
Finkelstein A, Daie K, Rozsa M, Darshan R, Svoboda K.  2026.  Connectivity underlying motor cortex activity during goal-directed behaviour.. Nature. 649(8096):416-422.
Kolb I, Hasseman JP, Matsumoto A, Jensen TP, Kopach O, Arthur BJ, Zhang Y, Tsang A, Reep D, Tsegaye G et al..  2026.  iGABASnFR2 is an improved genetically encoded protein sensor of GABA. eLife.
Kolb I, Hasseman JP, Matsumoto A, Jensen TP, Kopach O, Arthur BJ, Zhang Y, Tsang A, Reep D, Tsegaye G et al..  2026.  iGABASnFR2 is an improved genetically encoded protein sensor of GABA. eLife.
Vishwanath AAmrapali, Comyn T, Mira RG, Brossier C, Pascual-Caro C, Faour M, Boumendil K, Chintaluri C, Ramon-Duaso C, Fan R et al..  2026.  Mitochondrial Ca efflux controls neuronal metabolism and long-term memory across species.. Nat Metab.
Vishwanath AAmrapali, Comyn T, Mira RG, Brossier C, Pascual-Caro C, Faour M, Boumendil K, Chintaluri C, Ramon-Duaso C, Fan R et al..  2026.  Mitochondrial Ca efflux controls neuronal metabolism and long-term memory across species.. Nat Metab.
Choi H, Halanych C, Kasberg W, Testa MD, Rubin-Elgressy S, Nguyen P, Walpita D, Tsang A, Cortes D, Song EYue et al..  2026.  mRNAbow: A versatile gene expression system for multiplexed fluorescent imaging using optimized in vitro transcribed mRNA. bioRxiv.
Taban D, Jungblut M, Budiarta M, Helmerich DA, Kiesel C, Plutkis SE, Lavis LD, Krah D, Shaib AH, Doose S et al..  2026.  Nanoscale imaging of expanded cells and proteins with spontaneously blinking dyes. bioRxiv.
Taban D, Jungblut M, Budiarta M, Helmerich DA, Kiesel C, Plutkis SE, Lavis LD, Krah D, Shaib AH, Doose S et al..  2026.  Nanoscale imaging of expanded cells and proteins with spontaneously blinking dyes. bioRxiv.
Valinsky WC, Ray RP, Schaefer KS, Grimm JB, Nicolini C, Lavis LD, Clapham DE.  2026.  Phenotypic CRISPR screens identify NLRX1 as an essential activator of the human mitochondrial permeability transition. Proceedings of the National Academy of Sciences. 123:e2535298123.
Goldschmidt D, Guo Y, Chitnis SS, Christoforou C, Turner-Evans D, Ribeiro C, Hermundstad AM, Jayaraman V, Haberkern H.  2026.  Recent experience and internal state shape local search strategies in flies. Curr Biol.
Lokshtanov D, Gao SMax, Xu W, Kosman A, Roncato F, De La Cruz N, Khan NA, Woods A, Campbell I, Woehler A et al..  2026.  Reconstituting mouse embryogenesis Ex utero from Gastrulation to fetal development reveals maternally independent metabolic programs. bioRxiv.
Lokshtanov D, Gao SMax, Xu W, Kosman A, Roncato F, De La Cruz N, Khan NA, Woods A, Campbell I, Woehler A et al..  2026.  Reconstituting mouse embryogenesis Ex utero from Gastrulation to fetal development reveals maternally independent metabolic programs. bioRxiv.
Gándara L, Martelli F, Ravenscroft T, Crocker J, Batterham P.  2026.  Rethinking insecticide toxicology for the 21st century.. Insect Biochem Mol Biol. :104502.
2025
Suarez-Gomez D, Perez-Rosas NC, Miranda-Contreras GI, Colom-Braña SR, Zhang W, Mim MSahir, Tan S, Gazzo D, Tepole ABuganza, Deng Q et al..  2025.  CalciumInsights: An Open-Source, Tissue-Agnostic Graphical Interface for High-Quality Analysis of Calcium Signals. bioRxiv.
Chiu H, Robie AA, Branson K, Vippa T, Epstein S, Rubin GM, Anderson DJ, Schretter CE.  2025.  Cell type-specific contributions to a persistent aggressive internal state in female Drosophila. Elife. 12
Chiu H, Robie AA, Branson K, Vippa T, Epstein S, Rubin GM, Anderson DJ, Schretter CE.  2025.  Cell type-specific contributions to a persistent aggressive internal state in female Drosophila. Elife. 12
Wolff T, Eddison M, Chen N, Nern A, Sundaramurthi P, Sitaraman D, Rubin GM.  2025.  Cell type-specific driver lines targeting the Drosophila central complex and their use to investigate neuropeptide expression and sleep regulation. elife.
Pachitariu M, Rariden M, Stringer C.  2025.  Cellpose-SAM: Superhuman generalization for cellular segmentation. bioRxiv.
Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al..  2025.  Chromatix: A differentiable, GPU-accelerated wave-optics library. bioRxiv.
Bulanchuk P, Koay SAnn, Romani S.  2025.  A Class of Markovian self-reinforcing processes with power-law distributions. arXiv.
Park SYun, Sheridan A, An B, Jarvis E, Lyudchik J, Patton W, Axup JY, Chan SW, Damstra HGJ, Leible D et al..  2025.  Combinatorial protein barcodes enable self-correcting neuron tracing with nanoscale molecular context. bioRxiv.
Park SYun, Sheridan A, An B, Jarvis E, Lyudchik J, Patton W, Axup JY, Chan SW, Damstra HGJ, Leible D et al..  2025.  Combinatorial protein barcodes enable self-correcting neuron tracing with nanoscale molecular context. bioRxiv.
Pentimalli TMassimo, Schallenberg S, León-Periñán D, Legnini I, Theurillat I, Thomas G, Boltengagen A, Fritzsche S, Nimo J, Ruff L et al..  2025.  Combining spatial transcriptomics and ECM imaging in 3D for mapping cellular interactions in the tumor microenvironment.. Cell Syst. :101261.
Pentimalli TMassimo, Schallenberg S, León-Periñán D, Legnini I, Theurillat I, Thomas G, Boltengagen A, Fritzsche S, Nimo J, Ruff L et al..  2025.  Combining spatial transcriptomics and ECM imaging in 3D for mapping cellular interactions in the tumor microenvironment.. Cell Syst. :101261.