Biblio

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2013
Hires SAndrew, Pammer L, Svoboda K, Golomb D.  2013.  Tapered whiskers are required for active tactile sensation.. eLife. 2:e01350.
Rah J-C, Bas E, Colonell J, Mishchenko Y, Karsh B, Fetter RD, Myers EW, Chklovskii DB, Svoboda K, Harris TD et al..  2013.  Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography.. Frontiers in Neural Circuits. 7:177.
Chen T-W, Wardill TJ, Sun Y, Pulvar SR, Renninger SL, Baohan A, Schreiter ER, Kerr RA, Orger MB, Jayaraman V et al..  2013.  Ultrasensitive fluorescent proteins for imaging neuronal activity.. Nature. 499:295-300.
2012
Petreanu L, Gutnisky DA, Huber D, Xu N-long, O’Connor DH, Tian L, Looger L, Svoboda K.  2012.  Activity in motor-sensory projections reveals distributed coding in somatosensation.. Nature. 489:299-303.
Clack NG, O’Connor DH, Huber D, Petreanu L, Hires A, Peron S, Svoboda K, Myers EW.  2012.  Automated tracking of whiskers in videos of head fixed rodents.. PLoS Computational Biology. 8:e1002591.
Zariwala HA, Borghuis BG, Hoogland TM, Madisen L, Tian L, De Zeeuw CI, Zeng H, Looger LL, Svoboda K, Chen T-W.  2012.  A Cre-dependent GCaMP3 reporter mouse for neuronal imaging in vivo.. The Journal of Neuroscience. 32:3131-41.
Xu N-long, Harnett MT, Williams SR, Huber D, O’Connor DH, Svoboda K, Magee JC.  2012.  Nonlinear dendritic integration of sensory and motor input during an active sensing task.. Nature. 492:247-51.
Akerboom J, Chen T-W, Wardill TJ, Marvin JS, Mutlu S, Caldero NCarreras, Esposti F, Borghuis BG, Sun XRichard, Gordus A et al..  2012.  Optimization of a GCaMP calcium indicator for neural activity imaging.. The Journal of Neuroscience. 32:13819-40.
Jacob V, Petreanu L, Wright N, Svoboda K, Fox K.  2012.  Regular spiking and intrinsic bursting pyramidal cells show orthogonal forms of experience-dependent plasticity in layer V of barrel cortex.. Neuron. 73(2):391-404.
Madisen L, Mao T, Koch H, Zhuo J-min, Berenyi A, Fujisawa S, Hsu Y-WA, Garcia AJ, Gu X, Zanella S et al..  2012.  A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing.. Nature Neuroscience. 15(5):793-802.
2011
Gillette TA, Brown KM, Svoboda K, Liu Y, Ascoli GA.  2011.  DIADEMchallenge.org: a compendium of resources fostering the continuous development of automated neuronal reconstruction.. Neuroinformatics. 9(2-3):303-4.
Peron S, Svoboda K.  2011.  From cudgel to scalpel: toward precise neural control with optogenetics.. Nature Methods. 8(1):30-4.
Hooks BM, S Hires A, Zhang Y-X, Huber D, Petreanu L, Svoboda K, Shepherd GMG.  2011.  Laminar analysis of excitatory local circuits in vibrissal motor and sensory cortical areas.. PLoS Biology. 9(1):e1000572.
Mao T, Kusefoglu D, Hooks BM, Huber D, Petreanu L, Svoboda K.  2011.  Long-range neuronal circuits underlying the interaction between sensory and motor cortex.. Neuron. 72:111-23.
Nern A, Pfeiffer BD, Svoboda K, Rubin GM.  2011.  Multiple new site-specific recombinases for use in manipulating animal genomes.. Proceedings of the National Academy of Sciences of the United States of America. 108(34):14198-203.
Svoboda K.  2011.  The past, present, and future of single neuron reconstruction.. Neuroinformatics. 9(2-3):97-8.
2010
Suter BA, O'Connor T, Iyer V, Petreanu LT, Hooks BM, Kiritani T, Svoboda K, Shepherd GMG.  2010.  Ephus: multipurpose data acquisition software for neuroscience experiments.. Front Neural Circuits. 4:100.
Oviedo HV, Bureau I, Svoboda K, Zador AM.  2010.  The functional asymmetry of auditory cortex is reflected in the organization of local cortical circuits.. Nature Neuroscience. 13(11):1413-20.
Sato TR, Svoboda K.  2010.  The functional properties of barrel cortex neurons projecting to the primary motor cortex.. The Journal of Neuroscience. 30(12):4256-60.
Komiyama T, Sato TR, O’Connor DH, Zhang Y-X, Huber D, Hooks BM, Gabitto M, Svoboda K.  2010.  Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice.. Nature. 464(7292):1182-6.
O’Connor DH, Peron SP, Huber D, Svoboda K.  2010.  Neural activity in barrel cortex underlying vibrissa-based object localization in mice.. Neuron. 67(6):1048-61.
Wilbrecht L, Holtmaat A, Wright N, Fox K, Svoboda K.  2010.  Structural plasticity underlies experience-dependent functional plasticity of cortical circuits.. The Journal of Neuroscience. 30(14):4927-32.
O’Connor DH, Clack NG, Huber D, Komiyama T, Myers EW, Svoboda K.  2010.  Vibrissa-based object localization in head-fixed mice.. The Journal of Neuroscience. 30(5):1947-67.
2009
Holtmaat A, Svoboda K.  2009.  Experience-dependent structural synaptic plasticity in the mammalian brain.. Nature Reviews Neuroscience. 10(9):647-58.
Tian L, S Hires A, Mao T, Huber D, M Chiappe E, Chalasani SH, Petreanu L, Akerboom J, McKinney SA, Schreiter ER et al..  2009.  Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.. Nature Methods. 6(12):875-81.