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4265 Publications

Showing 3141-3150 of 4265 results
Gonen Lab
08/01/12 | Recent progress in membrane protein structures and investigation methods.
Gonen T, Waksman G
Current Opinion in Structural Biology. 2012 Aug;22(4):467-8. doi: 10.1016/j.sbi.2012.07.002
07/26/17 | Recent progress in the 3D reconstruction of Drosophila neural circuits.
Shinomiya K, Ito M
Decoding Neural Circuit Structure and Function:63-89. doi: 10.1007/978-3-319-57363-2_3

The brain of fruit fly Drosophila melanogaster has been used as a model system for functional analysis of neuronal circuits, including connectomics research, due to its modest size (~700 μm) and availability of abundant molecular genetics tools for visualizing neurons. Three-dimensional (3D) reconstruction of high-resolution images of neurons or circuits visualized with appropriate methods is a critical step for obtaining information such as morphology and connectivity patterns of neuronal circuits. In this chapter, we introduce methods for generating 3D reconstructed images with data acquired from confocal laser scanning microscopy (CLSM) or electron microscopy (EM) to analyze neuronal circuits found in the central nervous system (CNS) of the fruit fly. Comparisons of different algorithms and strategies for reconstructing neuronal circuits, using actual studies as references, will be discussed within this chapter.

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Grigorieff Lab
06/01/11 | Recent progress in understanding Alzheimer’s β-amyloid structures.
Fändrich M, Schmidt M, Grigorieff N
Trends in Biochemical Sciences. 2011 Jun;36(6):338-45. doi: 10.1016/j.tibs.2011.02.002

The formation of amyloid fibrils, protofibrils and oligomers from the β-amyloid (Aβ) peptide represents a hallmark of Alzheimer’s disease. Aβ-peptide-derived assemblies might be crucial for disease onset, but determining their atomic structures has proven to be a major challenge. Progress over the past 5 years has yielded substantial new data obtained with improved methodologies including electron cryo-microscopy and NMR. It is now possible to resolve the global fibril topology and the cross-β sheet organization within protofilaments, and to identify residues that are crucial for stabilizing secondary structural elements and peptide conformations within specific assemblies. These data have significantly enhanced our understanding of the mechanism of Aβ aggregation and have illuminated the possible relevance of specific conformers for neurodegenerative pathologies.

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Looger Lab
07/16/14 | Receptive field properties of bipolar cell axon terminals in the direction-selective sublaminas of the mouse retina.
Chen M, Lee S, Park SJ, Looger LL, Zhou ZJ
Journal of Neurophysiology. 2014 Jul 16;112(8):1950-62. doi: 10.1152/jn.00283.2014

Retinal bipolar cells (BCs) transmit visual signals in parallel channels from the outer to the inner retina, where they provide glutamatergic inputs to specific networks of amacrine and ganglion cells. Intricate network computation at BC axon terminals has been proposed as a mechanism for complex network computation, such as direction selectivity, but direct knowledge of the receptive field property and the synaptic connectivity of the axon terminals of various BC types is required in order to understand the role of axonal computation by BCs. The present study tested the essential assumptions of the presynaptic model of direction selectivity at axon terminals of three functionally distinct BC types that ramify in the direction-selective strata of the mouse retina. Results from two-photon Ca2+ imaging, optogenetic stimulation, and dual patch-clamp recording demonstrated that (1) CB5 cells do not receive fast GABAergic synaptic feedback from starburst amacrine cells (SACs), (2) light-evoked and spontaneous Ca2+ responses are well coordinated among various local regions of CB5 axon terminals, (3) CB5 axon terminals are not directionally selective, (4) CB5 cells consist of two novel functional subtypes with distinct receptive field structures, (5) CB7 cells provide direct excitatory synaptic inputs to, but receive no direct GABAergic synaptic feedback from SACs, and (6) CB7 axon terminals are not directionally selective either. These findings help to simplify models of direction selectivity by ruling out complex computation at BC terminals. They also show that CB5 comprises two functional subclasses of BCs.

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11/12/08 | Receptors, circuits, and behaviors: new directions in chemical senses.
Katz DB, Matsunami H, Rinberg D, Scott K, Wachowiak M, Wilson RI
The Journal of Neuroscience: The Official Journal of the Society for Neuroscience. 2008 Nov 12;28(46):11802-5. doi: 10.1523/JNEUROSCI.3613-08.2008

The chemical senses, smell and taste, are the most poorly understood sensory modalities. In recent years, however, the field of chemosensation has benefited from new methods and technical innovations that have accelerated the rate of scientific progress. For example, enormous advances have been made in identifying olfactory and gustatory receptor genes and mapping their expression patterns. Genetic tools now permit us to monitor and control neural activity in vivo with unprecedented precision. New imaging techniques allow us to watch neural activity patterns unfold in real time. Finally, improved hardware and software enable multineuron electrophysiological recordings on an expanded scale. These innovations have enabled some fresh approaches to classic problems in chemosensation.

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12/11/25 | Reclassifying therapeutic strategies: The 5R model and role of acupuncture
Weixing Pan
Journal of Traditional Chinese Medical Sciences. 2025 Dec 11:. doi: 10.1016/j.jtcms.2025.12.003

Mainstream medicine commonly categorizes acupuncture as “alternative and complementary,” a designation that reflects conceptual gaps in existing treatment classification systems. Integrating complementary medicine into the mainstream medical system requires a conceptual adjustment. Here, I propose a mechanism-based 5R classification—Removing, Repairing, Replacing, Replenishing, Regulating—to systematically categorize therapies. Based on this classification, acupuncture and its related interventions fall under functional regulation therapy. This framework offers a unified, functional perspective that facilitates the integration of complementary medicine into mainstream medical taxonomy.

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05/01/24 | Recognising the importance and impact of Imaging Scientists: Global guidelines for establishing career paths within core facilities
Wright GD, Thompson KA, Reis Y, Bischof J, Hockberger PE, Itano MS, Yen L, Adelodun ST, Bialy N, Brown CM, Chaabane L, Chew T, Chitty AI, Cordelières FP, De Niz M, Ellenberg J, Engelbrecht L, Fabian-Morales E, Fazeli E, Fernandez-Rodriguez J, Ferrando-May E, Fletcher G, Galloway GJ, Guerrero A, Guimarães JM, Jacobs CA, Jayasinghe S, Kable E, Kitten GT, Komoto S, Ma X, Marques JA, Millis BA, Miranda K, JohnO'Toole P, Olatunji SY, Paina F, Pollak CN, Prats C, Pylvänäinen JW, Rahmoon MA, Reiche MA, Riches JD, Rossi AH, Salamero J, Thiriet C, Terjung S, Vasconcelos AD, Keppler A
J Microsc. 2024 May 01:. doi: 10.1111/jmi.13307

In the dynamic landscape of scientific research, imaging core facilities are vital hubs propelling collaboration and innovation at the technology development and dissemination frontier. Here, we present a collaborative effort led by Global BioImaging (GBI), introducing international recommendations geared towards elevating the careers of Imaging Scientists in core facilities. Despite the critical role of Imaging Scientists in modern research ecosystems, challenges persist in recognising their value, aligning performance metrics and providing avenues for career progression and job security. The challenges encompass a mismatch between classic academic career paths and service-oriented roles, resulting in a lack of understanding regarding the value and impact of Imaging Scientists and core facilities and how to evaluate them properly. They further include challenges around sustainability, dedicated training opportunities and the recruitment and retention of talent. Structured across these interrelated sections, the recommendations within this publication aim to propose globally applicable solutions to navigate these challenges. These recommendations apply equally to colleagues working in other core facilities and research institutions through which access to technologies is facilitated and supported. This publication emphasises the pivotal role of Imaging Scientists in advancing research programs and presents a blueprint for fostering their career progression within institutions all around the world.

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06/01/05 | Recombinant approaches to IgG-like bispecific antibodies.
Marvin JS, Zhu Z
Acta Pharmacologica Sinica. 2005 Jun;26(6):649-58. doi: 10.1111/j.1745-7254.2005.00119.x

One of the major obstacles in the development of bispecific antibodies (BsAb) has been the difficulty of producing the materials in sufficient quality and quantity by traditional technologies, such as the hybrid hybridoma and chemical conjugation methods. In contrast to the rapid and significant progress in the development of recombinant BsAb fragments (such as diabody and tandem single chain Fv), the successful design and production of full length IgG-like BsAb has been limited. Compared to smaller fragments, IgG-like BsAb have long serum half-life and are capable of supporting secondary immune functions, such as antibody-dependent cellular cytotoxicity and complement-mediated cytotoxicity. The development of IgG-like BsAb as therapeutic agents will depend heavily on our research progress in the design of recombinant BsAb constructs (or formats) and production efficiency. This review will focus on recent advances in various recombinant approaches to the engineering and production of IgG-like BsAb.

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05/14/04 | Recombination of human mitochondrial DNA.
Kraytsberg Y, Schwartz M, Brown TA, Ebralidse K, Kunz WS, Clayton DA, Vissing J, Khrapko K
Science. 2004 May 14;304(5673):981. doi: 10.1126/science.1096342
Vale Lab
02/29/24 | Recommendations for accelerating open preprint peer review to improve the culture of science
Avissar-Whiting M, Belliard F, Bertozzi SM, Brand A, Brown K, Clément-Stoneham G, Dawson S, Dey G, Ecer D, Edmunds SC, Farley A, Fischer TD, Franko M, Fraser JS, Funk K, Ganier C, Harrison M, Hatch A, Hazlett H, Hindle S, Hook DW, Hurst P, Kamoun S, Kiley R, Lacy MM, LaFlamme M, Lawrence R, Lemberger T, Leptin M, Lumb E, MacCallum CJ, Marcum CS, Marinello G, Mendonça A, Monaco S, Neves K, Pattinson D, Polka JK, Puebla I, Rittman M, Royle SJ, Saderi D, Sever R, Shearer K, Spiro JE, Stern B, Taraborelli D, Vale R, Vasquez CG, Waltman L, Watt FM, Weinberg ZY, Williams M
PLOS Biology. 2024 Feb 29;22(2):e3002502. doi: 10.1371/journal.pbio.300250210.1371/journal.pbio.3002502.g001

Peer review is an important part of the scientific process, but traditional peer review at journals is coming under increased scrutiny for its inefficiency and lack of transparency. As preprints become more widely used and accepted, they raise the possibility of rethinking the peer-review process. Preprints are enabling new forms of peer review that have the potential to be more thorough, inclusive, and collegial than traditional journal peer review, and to thus fundamentally shift the culture of peer review toward constructive collaboration. In this Consensus View, we make a call to action to stakeholders in the community to accelerate the growing momentum of preprint sharing and provide recommendations to empower researchers to provide open and constructive peer review for preprints.

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