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23 ResultsShowing 1-10 of 23 results
BuildEM is a modular CMake-based system that leverages CMake's ExternalProject to simplify and automate a complex build process. Its goal is to allow simple, modular...
Ctrax was designed to allow high-throughput, quantitative analysis of behavior in freely moving flies. Our primary goal in this project is to provide quantitative behavior analysis tools to the...
Ephus is a collection of small programs which work together harmoniously to support electrophysiology, LSPS, and other applications. For an overview, see Suter, O'Connor, et al., ...
Fiji Cell Counter
Structured process for the manual count of particles (e.g. cell bodies) in 2D and 3D images of any kind with graphical mark-up in the image. For flexibility reasons this tool was implemented as...
Image segmentation, a fundamental problem in computer vision, concerns the division of an image into meaningful constituent regions, or segments. GALA is a powerful, nano-...
Video of animal movement is a valuable measure of their behavior. Translating video into interpretable results if done manually would be extremely time-consuming. Furthermore, motion...
Lattice Light Deconvolution Software
This open-source executable code is for post-acquisition deconvolution of data produced by the lattice light sheet microscope developed by Eric Betzig's group at HHMI's Janelia Research Campus....
Modular Visual Display System
This project documents the hardware and software of an updated version of the Panels, a modular display system typically used for insect vision research. This is an update of the old panel...
Neuroproof is a suite of software applications focused on electron microscopy image reconstruction. It also provides an easy-to-use graphical user interface for visualizing segmentation...
Frank Midgley (Janelia Scientific Computing) worked with Vivek Jayaraman, Dmitri Chklovskii and others at Janelia on this freely available software tool for neural circuit visualization. It allows...