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Project Teams:
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Gene Targeting and Transgenics
- High Performance Computing
- Immortalized Cell Line Culture
- Integrative Imaging
- Invertebrate Shared Resource
- Janelia Experimental Technology
- Mass Spectrometry
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing
- Viral Tools
- Vivarium
] 2015
Klein M, Afonso B, Vonner AJ, Hernandez-Nunez L, Berck M, Tabone CJ, Kane EA, Pieribone VA, Nitabach MN, Cardona A et al..
2015. Sensory determinants of behavioral dynamics in Drosophila thermotaxis.. Proceedings of the National Academy of Sciences of the United States of America. 112(2):E220-9.
Kreshuk A, Funke J, Cardona A, Hamprecht FA.
2015. Who is talking to whom: Synaptic partner detection in anisotropic volumes of insect brain.. Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015. :661-8.
2014
Parslow A, Cardona A, Bryson-Richardson RJ.
2014. Sample drift correction following 4D confocal time-lapse imaging.. Journal of Visualized Experiments: JoVE. (86)
2012
Cardona A, Tomancak P.
2012. Current challenges in open-source bioimage informatics.. Nature Methods. 9(7):661-5.
Funke J, Andres B, Hamprecht F, Cardona A, Cook M.
2012. Efficient automatic 3D-reconstruction of branching neurons from EM data.. Computer Vision and Pattern Recognition (CVPR), 2012 IEEE Conference on.
Saalfeld S, Fetter RD, Cardona A, Tomancak P..
2012. Elastic volume reconstruction from series of ultra-thin microscopy sections.. Nature Methods. 9(7):717-20.
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B et al..
2012. Fiji: an open-source platform for biological-image analysis.. Nature Methods. 9(7):676-82.
Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ.
2012. TrakEM2 software for neural circuit reconstruction.. PLoS One. 7:e38011.
Cardona A, Saalfeld S, Schindelin J, Arganda-Carreras I, Preibisch S, Longair M, Tomancak P, Hartenstein V, Douglas RJ.
2012. TrakEM2 software for neural circuit reconstruction.. PLoS One. 7(6):e38011.
2011
Sprecher SG, Cardona A, Hartenstein V..
2011. The Drosophila larval visual system: high-resolution analysis of a simple visual neuropil.. Developmental Biology. 358(1):33-43.
2010
Saalfeld S, Cardona A, Hartenstein V, Tomancak P..
2010. As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets.. Bioinformatics. 26(12):i57-63.
Schmid B, Schindelin J, Cardona A, Longair M, Heisenberg M..
2010. A high-level 3D visualization API for Java and ImageJ.. BMC Bioinformatics. 11:274.
Cardona A, Saalfeld S, Arganda I, Pereanu W, Schindelin J, Hartenstein V..
2010. Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts.. The Journal of Neuroscience. 30(22):7538-53.
Cardona A, Saalfeld S, Preibisch S, Schmid B, Cheng A, Pulokas J, Tomancak P, Hartenstein V..
2010. An integrated micro- and macroarchitectural analysis of the Drosophila brain by computer-assisted serial section electron microscopy.. PLoS Biology. 8(10)
Hartenstein V, Pereanu W, Truman J, Cardona A.
2010. Lineage-based connectivity map of the Drosophila brain.. Journal of Neurogenetics. 24:79.
Bery A, Cardona A, Martinez P, Hartenstein V..
2010. Structure of the central nervous system of a juvenile acoel, Symsagittifera roscoffensis.. Development Genes & Evolution. 220(3-4):61-76.
2009
Saalfeld S, Cardona A, Hartenstein V, Tomancak P.
2009. CATMAID: collaborative annotation toolkit for massive amounts of image data.. Bioinformatics. 25(15):1984-6.
Cardona A, Larsen C, Hartenstein V..
2009. Neuronal fiber tracts connecting the brain and ventral nerve cord of the early Drosophila larva.. The Journal of Comparative Neurology. 515(4):427-40.
2008
Schröter C, Herrgen L, Cardona A, Brouhard GJ, Feldman B, Oates AC.
2008. Dynamics of zebrafish somitogenesis.. Developmental Dynamics. 237(3):545-53.
2007
Morris J, Cardona A, De Miguel-Bonet MDel Mar, Hartenstein V.
2007. Neurobiology of the basal platyhelminth Macrostomum lignano: map and digital 3D model of the juvenile brain neuropile.. Development Genes & Evolution. 217(8):569-84.
2006
Cardona A, Hartenstein V, Romero R.
2006. Early embryogenesis of planaria: a cryptic larva feeding on maternal resources.. Development Genes & Evolution. 216(11):667-81.
2005
Cardona A, Hartenstein V, Romero R.
2005. The embryonic development of the triclad Schmidtea polychroa.. Development Genes & Evolution. 215(3):109-31.
Cardona A, Fernández J, Solana J, Romero R.
2005. An in situ hybridization protocol for planarian embryos: monitoring myosin heavy chain gene expression.. Development Genes & Evolution. 215(9):482-88.
2002