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2004
Pavlopoulos A, Berghammer AJ, Averof M, Klingler M.  2004.  Efficient transformation of the beetle Tribolium castaneum using the Minos transposable element: quantitative and qualitative analysis of genomic integration events.. Genetics. 167:737-46.
Koyama M, Hasegawa I, Osada T, Adachi Y, Nakahara K, Miyashita Y.  2004.  Functional magnetic resonance imaging of macaque monkeys performing visually guided saccade tasks: comparison of cortical eye fields with humans.. Neuron. 41:795-807.
Learned-Miller EG, Ahammad P.  2004.  Joint MRI bias removal using entropy minimization across images.. Neural Information Processing Systems Conference.
Reigl M, Alon U, Chklovskii DB.  2004.  Search for computational modules in the C. elegans brain.. BMC Biology. 2:25.
Berrisford JM, Akerboom J, Brouns S, Sedelnikova SE, Turnbull AP, van der Oost J, Salmon L, Hardré R, Murray IA, G Blackburn M et al..  2004.  The structures of inhibitor complexes of Pyrococcus furiosus phosphoglucose isomerase provide insights into substrate binding and catalysis.. Journal of Molecular Biology. 343(3):649-57.
2005
Brouns SJJ, Wu H, Akerboom J, Turnbull AP, de Vos WM, van der Oost J.  2005.  Engineering a selectable marker for hyperthermophiles.. The Journal of Biological Chemistry. 280(12):11422-31.
Pavlopoulos A, Averof M.  2005.  Establishing genetic transformation for comparative developmental studies in the crustacean Parhyale hawaiensis.. Proceedings of the National Academy of Sciences of the United States of America. 102(22):7888-93.
Ahammad P, Harmon C, Hammonds AS, Sastry S, Rubin GM.  2005.  Joint nonparametric alignment for analyzing spatial gene expression patterns of Drosophila imaginal discs.. IEEE Conference on Computer Vision and Pattern Recognition. 2:755-60.
Mongillo G, Curti E, Romani S, Amit DJ.  2005.  Learning in realistic networks of spiking neurons and spike-driven plastic synapses.. European Journal of Neuroscience. 21(11):3143-60.
Han Y-J, Wysocki LM, Thanawala MS, Siegrist T, Aizenberg J.  2005.  Template-dependent morphogenesis of oriented calcite crystals in the presence of magnesium ions.. Angewandte Chemie (International ed. in English). 44(16):2386-90.
2006
Yeo C, Ahammad P, Ramchandran K, Sastry S.  2006.  Compressed domain real-time action recognition.. IEEE International Workshop on Multimedia Signal Processing.
Huys QJM, Ahrens MB, Paninski L.  2006.  Efficient estimation of detailed single-neuron models.. Journal of Neurophysiology. 96(2):872-90.
Berrisford JM, Hounslow AM, Akerboom J, Hagen WR, Brouns SJJ, van der Oost J, Murray IA, G Blackburn M, Waltho JP, Rice DW et al..  2006.  Evidence supporting a cis-enediol-based mechanism for Pyrococcus furiosus phosphoglucose isomerase.. Journal of Molecular Biology. 358(5):1353-66.
Zhu S, Lin S, Kao C-F, Awasaki T, Chiang A-S, Lee T.  2006.  Gradients of the Drosophila Chinmo BTB-zinc finger protein govern neuronal temporal identity.. Cell. 127(2):409-22.
van de Werken HJG, Verhees CH, Akerboom J, de Vos WM, van der Oost J.  2006.  Identification of a glycolytic regulon in the archaea Pyrococcus and Thermococcus.. FEMS Microbiology Letters. 260(1):69-76.
Offenhäuser N, Castelletti D, Mapelli L, Soppo BEkalle, Regondi MCristina, Rossi P, D'Angelo E, Frassoni C, Amadeo A, Tocchetti A et al..  2006.  Increased ethanol resistance and consumption in Eps8 knockout mice correlates with altered actin dynamics.. Cell. 127(1):213-26.
Truman JW, Hiruma K, Allee JP, Macwhinnie SGB, Champlin DT, Riddiford LM.  2006.  Juvenile hormone is required to couple imaginal disc formation with nutrition in insects.. Science . 312(5778):1385-8.
Ahrens MB, Huys QJM, Paninski L.  2006.  Large-scale biophysical parameter estimation in single neurons via constrained linear regression.. Neural Information Processing Systems. 18
Romani S, Amit DJ, Mongillo G.  2006.  Mean-field analysis of selective persistent activity in presence of short-term synaptic depression.. Journal of Computational Neuroscience. 20(2):201-17.
Thaw P, Sedelnikova SE, Muranova T, Wiese S, Ayora S, Alonso JC, Brinkman AB, Akerboom J, van der Oost J, Rafferty JB.  2006.  Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family.. Nucleic Acids Research. 34(5):1439-49.
Thaw P, Sedelnikova SE, Muranova T, Wiese S, Ayora S, Alonso JC, Brinkman AB, Akerboom J, van der Oost J, Rafferty JB.  2006.  Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family.. Nucleic Acids Research. 34(5):1439-49.
Thaw P, Sedelnikova SE, Muranova T, Wiese S, Ayora S, Alonso JC, Brinkman AB, Akerboom J, van der Oost J, Rafferty JB.  2006.  Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family.. Nucleic Acids Research. 34(5):1439-49.
2007
van Loo SWolterink-, van Eerde A, Siemerink MAJ, Akerboom J, Dijkstra BW, van der Oost J.  2007.  Biochemical and structural exploration of the catalytic capacity of Sulfolobus KDG aldolases.. The Biochemical Journal. 403(3):421-30.
Harmon C, Ahammad P, Hammonds AS, Weiszmann R, Celniker SE, Sastry S, Rubin GM.  2007.  Comparative analysis of spatial patterns of gene expression in Drosophila Melanogaster imaginal discs.. International Conference on Research in Computational Molecular Biology.
Brouns SJJ, Turnbull AP, Willemen HLDM, Akerboom J, van der Oost J.  2007.  Crystal structure and biochemical properties of the D-arabinose dehydrogenase from Sulfolobus solfataricus.. Journal of Molecular Biology. 371(5):1249-60.