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2009
Kuipers RKP, Joosten H-J, Verwiel E, Paans S, Akerboom J, van der Oost J, Leferink NGH, van Berkel WJH, Vriend G, Schaap PJ.  2009.  Correlated mutation analyses on super-family alignments reveal functionally important residues.. Proteins. 76(3):608-16.
Akerboom J, Rivera JDVélez, Guilbe MMRodrígu, Malavé ECAlfaro, Hernandez HH, Tian L, S Hires A, Marvin JS, Looger LL, Schreiter ER.  2009.  Crystal structures of the GCaMP calcium sensor reveal the mechanism of fluorescence signal change and aid rational design.. The Journal of Biological Chemistry. 284:6455-64.
Khrapunovich-Baine M, Menon V, Verdier-Pinard P, Smith AB, Angeletti RHogue, Fiser A, Horwitz SBand, Xiao H.  2009.  Distinct pose of discodermolide in taxol binding pocket drives a complementary mode of microtubule stabilization.. Biochemistry. 48(49):11664-77.
Yeung YAndy, Leabman MK, Marvin JS, Qiu J, Adams CW, Lien S, Starovasnik MA, Lowman HB.  2009.  Engineering human IgG1 affinity to human neonatal Fc receptor: impact of affinity improvement on pharmacokinetics in primates.. Journal of Immunology. 182(12):7663-71.
Rebeiz M, Ramos-Womack M, Jeong S, Andolfatto P, Werner T, True J, Stern DL, Carroll SB.  2009.  Evolution of the tan locus contributed to pigment loss in Drosophila santomea: a response to Matute et al.. Cell. 139(6):1189-96.
Levin ED, Aschner M, Heberlein U, Ruden D, Welsh-Bohmer KA, Bartlett S, Berger K, Chen L, Corl AB, Eddins D et al..  2009.  Genetic aspects of behavioral neurotoxicology.. Neurotoxicology. 30(5):741-53.
Tian L, S Hires A, Mao T, Huber D, M Chiappe E, Chalasani SH, Petreanu L, Akerboom J, McKinney SA, Schreiter ER et al..  2009.  Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.. Nature Methods. 6(12):875-81.
Liubicich DM, Serano JM, Pavlopoulos A, Kontarakis Z, Protas ME, Kwan E, Chatterjee S, Tran KD, Averof M, Patel NH.  2009.  Knockdown of parhyale ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology.. Proceedings of the National Academy of Sciences of the United States of America. 106:13892-6.
Srinivasan DG, Ano L, Davis GK, Stern DL.  2009.  Molecular Basis of Facultative Asexuality in Aphids. Society for Integrative and Comparative Biology. 49:E308-E308.
Chen JZ, Settembre EC, Aoki ST, Zhang X, A Bellamy R, Dormitzer PR, Harrison SC, Grigorieff N.  2009.  Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM.. Proceedings of the National Academy of Sciences of the United States of America. 106(26):10644-8.
Lewis TL, Mao T, Svoboda K, Arnold DB.  2009.  Myosin-dependent targeting of transmembrane proteins to neuronal dendrites.. Nature Neuroscience. 12(5):568-76.
Dementieva IS, Tereshko V, McCrossan ZA, Solomaha E, Araki D, Xu C, Grigorieff N, Goldstein SAN.  2009.  Pentameric assembly of potassium channel tetramerization domain-containing protein 5.. Journal of Molecular Biology. 387(1):175-91.
Pavlopoulos A, Kontarakis Z, Liubicich DM, Serano JM, Akam M, Patel NH, Averof M.  2009.  Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean.. Proceedings of the National Academy of Sciences of the United States of America. 106(33):13897-902.
Pavlopoulos A, Kontarakis Z, Liubicich DM, Serano JM, Akam M, Patel NH, Averof M.  2009.  Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean.. Proceedings of the National Academy of Sciences of the United States of America. 106(33):13897-902.
Yeo C, Ahammad P, Zhang H, Ramchandran K.  2009.  Rate-constrained distributed distance testing and its applications.. IEEE International Conference on Acoustics, Speech and Signal Processing.
Yeo C, Ahammad P, Zhang H, Ramchandran K.  2009.  Rate-constrained distributed distance testing and its applications.. IEEE International Conference on Acoustics, Speech and Signal Processing.
Kawashima T, Okuno H, Nonaka M, Adachi-Morishima A, Kyo N, Okamura M, Takemoto-Kimura S, Worley PF, Bito H.  2009.  Synaptic activity-responsive element in the Arc/Arg3.1 promoter essential for synapse-to-nucleus signaling in activated neurons.. Proceedings of the National Academy of Sciences of the United States of America. 106(1):316-21.
Zhou B, Williams DW, Altman J, Riddiford LM, Truman JW.  2009.  Temporal patterns of broad isoform expression during the development of neuronal lineages in Drosophila.. Neural Development. 4:39.
Tang J, Vaziri A, Akerboom JP, Looger L, Shank CV.  2009.  Three dimensional super resolution fluorescence imaging of single bacterial cells by stereo photoactivated localization microscopy.. Microscopy and Microanalysis. 15:564-5.
2010
Moussavi F, Heitz G, Amat F, Comolli LR, Koller D, Horowitz M.  2010.  3D segmentation of cell boundaries from whole cell cryogenic electron tomography volumes.. Journal of Structural Biology. 170(1):134-45.
Amat F, Castaño-Diez D, Lawrence A, Moussavi F, Winkler H, Horowitz M.  2010.  Alignment of cryo-electron tomography datasets.. Methods in Enzymology. 482:343-67.
Amat F, Comolli LR, Nomellini JF, Moussavi F, Downing KH, Smit J, Horowitz M.  2010.  Analysis of the intact surface layer of Caulobacter crescentus by cryo-electron tomography.. Journal of Bacteriology. 192(22):5855-65.
Peng H, Ruan Z, Atasoy D, Sternson S.  2010.  Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model.. Bioinformatics. 26:i38-46.
Jain V, Bollmann B, Richardson M, Berger DR, Helmstaedter MN, Briggman KL, Denk W, Bowden JB, Mendenhall JM, Abraham WC et al..  2010.  Boundary learning by optimization with topological constraints.. IEEE Conference on Computer Vision and Pattern Recognition.
Tien JF, Umbreit NT, Gestaut DR, Franck AD, Cooper J, Wordeman L, Gonen T, Asbury CL, Davis TN.  2010.  Cooperation of the Dam1 and Ndc80 kinetochore complexes enhances microtubule coupling and is regulated by aurora B.. The Journal of Cell Biology. 189(4):713-23.