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2025
Charvat AF, Mason-Chalmers K, Grabinska-Rogala A, Shivakumar S, Gale-Day Z, Wu T, Millbern Z, Grimm J, Carroll EC, Nilsson P et al..  2025.  Aurora 2.0: A fluorogenic dye library for expanding the capability of protein-adaptive Differential Scanning Fluorimetry (paDSF).. SLAS Discov. :100259.
Hillsley A, Stein J, Tillberg PW, Stern DL, Funke J.  2025.  A Bayesian model to count the number of two-state emitters in a diffraction limited spot.. Nano Lett.
Hillsley A, Stein J, Tillberg PW, Stern DL, Funke J.  2025.  A Bayesian model to count the number of two-state emitters in a diffraction limited spot.. Nano Lett.
Wang ZAiden, Chen S, Liu Y, Liu D, Svoboda K, Li N, Druckmann S.  2025.  Brain-wide analysis reveals movement encoding structured across and within brain areas. Nat Neurosci.
Jacob LPL, Bailes SM, Williams SD, Stringer C, Lewis LD.  2025.  Brainwide hemodynamics predict EEG neural rhythms across sleep and wakefulness in humans.. PLoS Comput Biol. 21(9):e1013497.
Suarez-Gomez D, Perez-Rosas NC, Miranda-Contreras GI, Colom-Braña SR, Zhang W, Mim MSahir, Tan S, Gazzo D, Tepole ABuganza, Deng Q et al..  2025.  CalciumInsights: An Open-Source, Tissue-Agnostic Graphical Interface for High-Quality Analysis of Calcium Signals. bioRxiv.
Suarez-Gomez D, Perez-Rosas NC, Miranda-Contreras GI, Colom-Braña SR, Zhang W, Mim MSahir, Tan S, Gazzo D, Tepole ABuganza, Deng Q et al..  2025.  CalciumInsights: An Open-Source, Tissue-Agnostic Graphical Interface for High-Quality Analysis of Calcium Signals. bioRxiv.
Shitara A, Nagase H, Bleck CKE, Ohno Y, Kataoka H, Satoh K, Kashimata M.  2025.  Cdc42 regulates apical membrane fusion via the Rab11a–VAMP2 pathway in salivary gland acinar cells. bioRxiv.
Shitara A, Nagase H, Bleck CKE, Ohno Y, Kataoka H, Satoh K, Kashimata M.  2025.  Cdc42 regulates apical membrane fusion via the Rab11a–VAMP2 pathway in salivary gland acinar cells. bioRxiv.
Chiu H, Robie AA, Branson K, Vippa T, Epstein S, Rubin GM, Anderson DJ, Schretter CE.  2025.  Cell type-specific contributions to a persistent aggressive internal state in female Drosophila. Elife. 12
Wolff T, Eddison M, Chen N, Nern A, Sundaramurthi P, Sitaraman D, Rubin GM.  2025.  Cell type-specific driver lines targeting the Drosophila central complex and their use to investigate neuropeptide expression and sleep regulation. elife.
Wolff T, Eddison M, Chen N, Nern A, Sundaramurthi P, Sitaraman D, Rubin GM.  2025.  Cell type-specific driver lines targeting the Drosophila central complex and their use to investigate neuropeptide expression and sleep regulation. elife.
Stringer C, Pachitariu M.  2025.  Cellpose3: One-click image restoration for improved cellular segmentation.. Nat Methods.
Pachitariu M, Rariden M, Stringer C.  2025.  Cellpose-SAM: Superhuman generalization for cellular segmentation. bioRxiv.
Gupta H, Haase J, Wu Y, Chen J, Karadimov G, Shroff H, Kelly AE.  2025.  The CENP-A chaperone complex spatially organizes centromeres. bioRxiv.
Hu G, Savini M, Cooke MBrandon, Wei X, Deng D, Gao SM, Xia RAlps, Guan Y, Wen AX, Yu X et al..  2025.  Chemical modulation of gut bacterial metabolism induces colanic acid and extends the lifespan of nematode and mammalian hosts.. PLoS Biol. 23(11):e3002749.
Faini G, Tuffery M, Saleem A, Zhang L, Du F, Le Bourdelles G, Duroure K, Schreiter ER, Tanese D, Emiliani V et al..  2025.  CHLOK: a chemigenetic multicolor labeling system to visualize neuronal birthdate and circuit integration. Research Square.
Faini G, Tuffery M, Saleem A, Zhang L, Du F, Le Bourdelles G, Duroure K, Schreiter ER, Tanese D, Emiliani V et al..  2025.  CHLOK: a chemigenetic multicolor labeling system to visualize neuronal birthdate and circuit integration. Research Square.
Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al..  2025.  Chromatix: A differentiable, GPU-accelerated wave-optics library. bioRxiv.
Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al..  2025.  Chromatix: A differentiable, GPU-accelerated wave-optics library. bioRxiv.
Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al..  2025.  Chromatix: A differentiable, GPU-accelerated wave-optics library. bioRxiv.
Glendening AM, Stephens C, Vuruputoor VS, Chaganti T, Myles MN, Stern DL, Abdelalim M, Juang Y-P, Hogenhout SA, Mathers TC et al..  2025.  Chromosome scale genomes of two invasive Adelges species enable virtual screening for selective adelgicides.. G3 (Bethesda). 16(1)
Glendening AM, Stephens C, Vuruputoor VS, Chaganti T, Myles MN, Stern DL, Abdelalim M, Juang Y-P, Hogenhout SA, Mathers TC et al..  2025.  Chromosome scale genomes of two invasive Adelges species enable virtual screening for selective adelgicides.. G3 (Bethesda). 16(1)
Csillag V, Forastieri C, Szücs GMartina, Vidal ITalaya, Bizzozzero MHiriart, Lavis LD, Calvigioni D, Fuzik J.  2025.  Collateral connectomes of Esr1-positive hypothalamic neurons modulate defensive behavior plasticity. bioRxiv.
Park SYun, Sheridan A, An B, Jarvis E, Lyudchik J, Patton W, Axup JY, Chan SW, Damstra HGJ, Leible D et al..  2025.  Combinatorial protein barcodes enable self-correcting neuron tracing with nanoscale molecular context. bioRxiv.