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2009
Preibisch S, Saalfeld S, Tomancak P.  2009.  Globally optimal stitching of tiled 3D microscopic image acquisitions.. Bioinformatics. 25(11):1463-5.
Branson K, Robie AA, Bender J, Perona P, Dickinson MH.  2009.  High-throughput ethomics in large groups of Drosophila.. Nature Methods. 6(6):451-7.
Liu T, Peng H, Zhou X.  2009.  Imaging informatics for personalised medicine: applications and challenges.. International Journal of Functional Informatics and Personalised Medicine. 2(2):125-35.
Tian L, S Hires A, Mao T, Huber D, M Chiappe E, Chalasani SH, Petreanu L, Akerboom J, McKinney SA, Schreiter ER et al..  2009.  Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.. Nature Methods. 6(12):875-81.
Liubicich DM, Serano JM, Pavlopoulos A, Kontarakis Z, Protas ME, Kwan E, Chatterjee S, Tran KD, Averof M, Patel NH.  2009.  Knockdown of parhyale ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology.. Proceedings of the National Academy of Sciences of the United States of America. 106:13892-6.
Liubicich DM, Serano JM, Pavlopoulos A, Kontarakis Z, Protas ME, Kwan E, Chatterjee S, Tran KD, Averof M, Patel NH.  2009.  Knockdown of parhyale ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology.. Proceedings of the National Academy of Sciences of the United States of America. 106:13892-6.
Liubicich DM, Serano JM, Pavlopoulos A, Kontarakis Z, Protas ME, Kwan E, Chatterjee S, Tran KD, Averof M, Patel NH.  2009.  Knockdown of parhyale ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology.. Proceedings of the National Academy of Sciences of the United States of America. 106:13892-6.
Li W, Pan Y, Wang Z, Gong H, Gong Z, Liu L.  2009.  Morphological characterization of single fan-shaped body neurons in Drosophila melanogaster.. Cell and Tissue Research. 336(3):509-19.
Carmine-Simmen K, Proctor T, Tschäpe J, Poeck B, Triphan T, Strauss R, Kretzschmar D.  2009.  Neurotoxic effects induced by the Drosophila amyloid-beta peptide suggest a conserved toxic function.. Neurobiology of Disease. 33(2):274-81.
Carmine-Simmen K, Proctor T, Tschäpe J, Poeck B, Triphan T, Strauss R, Kretzschmar D.  2009.  Neurotoxic effects induced by the Drosophila amyloid-beta peptide suggest a conserved toxic function.. Neurobiology of Disease. 33(2):274-81.
Tomar RS, Psathas JN, Zhang H, Zhang Z, Reese JC.  2009.  A novel mechanism of antagonism between ATP-dependent chromatin remodeling complexes regulates RNR3 expression.. Molecular and Cellular Biology. 29(12):3255-65.
Pavlopoulos A, Kontarakis Z, Liubicich DM, Serano JM, Akam M, Patel NH, Averof M.  2009.  Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean.. Proceedings of the National Academy of Sciences of the United States of America. 106(33):13897-902.
Pavlopoulos A, Kontarakis Z, Liubicich DM, Serano JM, Akam M, Patel NH, Averof M.  2009.  Probing the evolution of appendage specialization by Hox gene misexpression in an emerging model crustacean.. Proceedings of the National Academy of Sciences of the United States of America. 106(33):13897-902.
Bohland JW, Wu C, Barbas H, Bokil H, Bota M, Breiter HC, Cline HT, Doyle JC, Freed PJ, Greenspan RJ et al..  2009.  A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale.. PLoS Computational Biology. 5(3):e1000334.
Bohland JW, Wu C, Barbas H, Bokil H, Bota M, Breiter HC, Cline HT, Doyle JC, Freed PJ, Greenspan RJ et al..  2009.  A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale.. PLoS Computational Biology. 5(3):e1000334.
Goldwater DS, Pavlides C, Hunter RG, Bloss EB, Hof PR, McEwen BS, Morrison JH.  2009.  Structural and functional alterations to rat medial prefrontal cortex following chronic restraint stress and recovery.. Neuroscience. 164(2):798-808.
Petreanu L, Mao T, Sternson SM, Svoboda K.  2009.  The subcellular organization of neocortical excitatory connections.. Nature. 457:1142-5.
Bupp MRGubbels, Edwards B, Guo C, Wei D, Chen G, Wong B, Masteller E, Peng SL.  2009.  T cells require Foxo1 to populate the peripheral lymphoid organs.. Eur J Immunol. 39(11):2991-9.
Mizuseki K, Sirota A, Pastalkova E, Buzsáki G.  2009.  Theta oscillations provide temporal windows for local circuit computation in the entorhinal-hippocampal loop.. Neuron. 64(2):267-80.
Patwari P, Chutkow WA, Cummings K, Verstraeten VLRM, Lammerding J, Schreiter ER, Lee RT.  2009.  Thioredoxin-independent regulation of metabolism by the alpha-arrestin proteins.. Journal of Biological Chemistry. 284(37):24996-5003.
Peng H, Long F, Myers EW.  2009.  VANO: a volume-object image annotation system.. Bioinformatics. 25:695-7.
2008
Neuser K, Triphan T, Mronz M, Poeck B, Strauss R.  2008.  Analysis of a spatial orientation memory in Drosophila.. Nature. 453(7199):1244-7.
Long F, Peng H, Liu X, Kim SK, Myers E.  2008.  Automatic recognition of cells (ARC) for 3D images of C. elegans.. Proceedings of the 2008 Conference on Computational Molecular Biology (RECOMB) (Singapore, 2008).
Peng H.  2008.  Bioimage informatics: a new area of engineering biology.. Bioinformatics. 24(17):1827-36.
Parag T, Porikli F, Elgammal A.  2008.  Boosting adaptive linear weak classifiers for online learning and tracking.. IEEE Conference on Computer Vision and Pattern Recognition.