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5024 Results

Showing 4101-4110 of 5024 results
People
Shubham Rathore
Postdoctoral Scientist 01
People
Shumei Zhao
Research Technician
People
Shun Hiramatsu
Visiting Postdoctoral Associate
People
Shuqin Zhang
Research Specialist
Publications
10/31/19 | ShuTu: Open-source software for efficient and accurate reconstruction of dendritic morphology.
Jin DZ, Zhao T, Hunt DL, Tillage RP, Hsu C, Spruston N
Frontiers in Neuroinformatics. 2019 Oct 31;13:68. doi: 10.3389/fninf.2019.00068

Neurons perform computations by integrating inputs from thousands of synapses-mostly in the dendritic tree-to drive action potential firing in the axon. One fruitful approach to studying this process is to record from neurons using patch-clamp electrodes, fill the recorded neurons with a substance that allows subsequent staining, reconstruct the three-dimensional architectures of the dendrites, and use the resulting functional and structural data to develop computer models of dendritic integration. Accurately producing quantitative reconstructions of dendrites is typically a tedious process taking many hours of manual inspection and measurement. Here we present ShuTu, a new software package that facilitates accurate and efficient reconstruction of dendrites imaged using bright-field microscopy. The program operates in two steps: (1) automated identification of dendritic processes, and (2) manual correction of errors in the automated reconstruction. This approach allows neurons with complex dendritic morphologies to be reconstructed rapidly and efficiently, thus facilitating the use of computer models to study dendritic structure-function relationships and the computations performed by single neurons.

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Conferences
Signal Transforms in the Early Visual System
A half-century of in vivo electrophysiological recordings indicate that neurons in many areas of the CNS, including the visual system, become sensitive to increasingly specific...
Publications
12/04/25 | Signatures of remote planning in hippocampal replay
Lustig B, Wang Y, Romani S, Pastalkova E, Lee AK
bioRxiv. 2025 Dec 04:. doi: 10.64898/2025.12.02.691753

During brief, intermittent “replay” events, hippocampal activity can express navigational trajectories disconnected from both when and where they originally occurred. While replay biased toward immediate future goals has been observed, there is no evidence yet linking replay to planning beyond the next action. Here, we designed a sequential spatial working memory task which required rats to utilize information across multiple temporally separated actions. Remote replay events matched the animal’s future navigational choices made after completing an intervening subtask. Critically, this occurred only when the replayed information was useful for reducing memory load, consistent with it being an active process. Our findings suggest these remote replay events are a neural correlate of episodic forethought, allowing animals to use memories to plan beyond their immediate surroundings.

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Publications
01/08/18 | Simple integration of fast excitation and offset, delayed inhibition computes directional selectivity in Drosophila.
Gruntman E, Romani S, Reiser MB
Nature Neuroscience. 2018 Jan 08;21(2):250-7. doi: 10.1038/s41593-017-0046-4

A neuron that extracts directionally selective motion information from upstream signals lacking this selectivity must compare visual responses from spatially offset inputs. Distinguishing among prevailing algorithmic models for this computation requires measuring fast neuronal activity and inhibition. In the Drosophila melanogaster visual system, a fourth-order neuron-T4-is the first cell type in the ON pathway to exhibit directionally selective signals. Here we use in vivo whole-cell recordings of T4 to show that directional selectivity originates from simple integration of spatially offset fast excitatory and slow inhibitory inputs, resulting in a suppression of responses to the nonpreferred motion direction. We constructed a passive, conductance-based model of a T4 cell that accurately predicts the neuron's response to moving stimuli. These results connect the known circuit anatomy of the motion pathway to the algorithmic mechanism by which the direction of motion is computed.

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