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4954 Results

Showing 51-60 of 4954 results
Conferences
4D Cellular Physiology Reimagined: Theory as a Principal Component
Organized by Kristin Branson (Janelia), James Fitzgerald (Janelia), Ann Hermundstad (Janelia), Michael Reiser (Janelia), and Allyson Sgro (Boston University), this is the...
Conferences
4D Cellular Physiology Symposium
Led by Jennifer Lippincott-Schwartz, Janelia launches its 15-year 4D Cellular Physiology (4DCP) research program in September, 2022. With expertise in cell biology, neuroscience, physiology and...
Publications
04/01/18 | 50 Hz volumetric functional imaging with continuously adjustable depth of focus.
Lu R, Tanimoto M, Koyama M, Na J
Biomedical Optics Express. 2018 Apr;9(4):1964-76. doi: 10.1364/BOE.9.001964

Understanding how neural circuits control behavior requires monitoring a large population of neurons with high spatial resolution and volume rate. Here we report an axicon-based Bessel beam module with continuously adjustable depth of focus (CADoF), that turns frame rate into volume rate by extending the excitation focus in the axial direction while maintaining high lateral resolutions. Cost-effective and compact, this CADoF Bessel module can be easily integrated into existing two-photon fluorescence microscopes. Simply translating one of the relay lenses along its optical axis enabled continuous adjustment of the axial length of the Bessel focus. We used this module to simultaneously monitor activity of spinal projection neurons extending over 60 µm depth in larval zebrafish at 50 Hz volume rate with adjustable axial extent of the imaged volume.

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Conferences
5th Chesapeake Bay Area Single Molecule Biology Meeting
Organized by Zhe Liu, Robert Singer, Luke Lavis and Jennifer Lippincott-Schwartz, the 5th CBASMB meeting is a platform for local imaging tool builders and users (Janelia, NIH and local...
Publications
09/11/25 | <I>stk32a</I> links sleep homeostasis to suppression of sensory and motor systems
Tran S, Emtage J, Zhang C, Liu X, Lecoeuche M, Andreev A, Oikonomou G, Narayan S, Garcia B, Cammidge T, Gonzales C, Hurley H, Yap M, Li S, Wang F, Wang T, Ahrens MB, Chou T, Xu M, Liu Q, Prober DA
bioRxiv. 2025 Sep 11:. doi: 10.1101/2025.09.09.675098

Sleep is regulated by a homeostatic process and associated with an increased arousal threshold, but the genetic and neuronal mechanisms that implement these essential features of sleep remain poorly understood. To address these fundamental questions, we performed a zebrafish genetic screen informed by human genome-wide association studies. We found that mutation of serine/threonine kinase 32a (stk32a) results in increased sleep and impaired sleep homeostasis in both zebrafish and mice, and that stk32a acts downstream of neurotensin signaling and the serotonergic raphe in zebrafish. stk32a mutation reduces phosphorylation of neurofilament proteins, which are co-expressed with stk32a in neurons that regulate motor activity and in lateral line hair cells that detect environmental stimuli, and ablating these cells phenocopies stk32a mutation. Neurotensin signaling inhibits specific sensory and motor populations, and blocks stimulus-evoked responses of neurons that relay sensory information from hair cells to the brain. Our work thus shows that stk32a is an evolutionarily conserved sleep regulator that links neuropeptidergic and neuromodulatory systems to homeostatic sleep drive and changes in arousal threshold, which are implemented through suppression of specific sensory and motor systems.

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Publications
06/01/09 | [Analysis on acupuncture literature in Science Citation Index (SCI) periodicals in 2007].
Gao L, Tian L, Guo Y
Zhongguo Zhen Jiu = Chinese Acupuncture & Moxibustion. 2009 Jun;29(6):504-7. doi: 10.1364/AO.50.001792

To grasp the international developing tendency of acupuncture research and provide some references for promoting acupuncture and moxibustion internationalization process, the articles about acupuncture in Science Citation Index (SCI) periodicals in 2007 were retrieved by adopting the retrieval tactics on line in combination with database searching. Results indicate that 257 articles about acupuncture had been retrived from the SCI Web databases. These articles were published in 125 journals respectively, most of which were Euramerican journals. Among these journals, the impact factor of the Journal of the American Medical Association (JAMA), 25. 547, is the highest one. It is shown that the impact factors of the SCI periodicals, in which acupuncture articles embodied are increased, the quality of these articles are improved obviously and the types of the articles are various in 2007, but there is obvious difference in the results of these studies due to the difference of experimental methods, the subjects of these experiments and acupuncture manipulations. Therefore, standardization of many problems arising from the researches on acupuncture is extremely imminent.

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Publications
01/12/22 | [Dilemma and breakthrough of acupuncture-moxibustion department under the situation of rapid expansion of hospital].
Chen S, Pan W, Jing X, Fang J
Zhongguo Zhen Jiu. 2022 Jan 12;42(1):8-12. doi: 10.13703/j.0255-2930.20201121-0002

Under the situation of the rapid expansion of hospital, the dilemma of acupuncture-moxibustion department, as well as the relevant solutions are explored. The main reasons for the shrinking situation of the service in acupuncture-moxibustion department include: the disease-based department division trends to divert many diseases suitably treated in acupuncture-moxibustion department; the environment pursuing economic benefits restricts the development of acupuncture-moxibustion therapy characterized by "simple and low-cost operation". There are three important approaches for breaking through the dilemma of acupuncture and moxibustion therapy. First, modifying the traditional service mode as waiting for patients in acupuncture-moxibustion department and promoting acupuncture and moxibustion technology to be adopted in other departments rather than limited only in acupuncture-moxibustion department. Second, increasing the charges of acupuncture and moxibustion technology rationally. Third, positioning accurately the role of acupuncture and moxibustion technology in health services based on its own characteristics and advantages and promoting it in community medical institutions. All of these solutions require the guidance of supporting policies.

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Publications
09/01/09 | A 3D digital atlas of C. elegans and its application to single-cell analyses.
Long F, Peng H, Liu X, Kim SK, Myers E
Nature Methods. 2009 Sep;6:667-72. doi: 10.1007/s12021-010-9090-x

We built a digital nuclear atlas of the newly hatched, first larval stage (L1) of the wild-type hermaphrodite of Caenorhabditis elegans at single-cell resolution from confocal image stacks of 15 individual worms. The atlas quantifies the stereotypy of nuclear locations and provides other statistics on the spatial patterns of the 357 nuclei that could be faithfully segmented and annotated out of the 558 present at this developmental stage. We then developed an automated approach to assign cell names to each nucleus in a three-dimensional image of an L1 worm. We achieved 86% accuracy in identifying the 357 nuclei automatically. This computational method will allow high-throughput single-cell analyses of the post-embryonic worm, such as gene expression analysis, or ablation or stimulation of cells under computer control in a high-throughput functional screen.

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Publications
10/01/12 | A battery-free multichannel digital neural/EMG telemetry system for flying insects.
Thomas SJ, Harrison RR, Leonardo A, Reynolds MS
IEEE Transactions on Biomedical Circuits and Systems. 2012 Oct;6(5):424-36. doi: 10.1109/TBCAS.2012.2222881

This paper presents a digital neural/EMG telemetry system small enough and lightweight enough to permit recording from insects in flight. It has a measured flight package mass of only 38 mg. This system includes a single-chip telemetry integrated circuit (IC) employing RF power harvesting for battery-free operation, with communication via modulated backscatter in the UHF (902-928 MHz) band. An on-chip 11-bit ADC digitizes 10 neural channels with a sampling rate of 26.1 kSps and 4 EMG channels at 1.63 kSps, and telemeters this data wirelessly to a base station. The companion base station transceiver includes an RF transmitter of +36 dBm (4 W) output power to wirelessly power the telemetry IC, and a digital receiver with a sensitivity of -70 dBm for 10⁻⁵ BER at 5.0 Mbps to receive the data stream from the telemetry IC. The telemetry chip was fabricated in a commercial 0.35 μ m 4M1P (4 metal, 1 poly) CMOS process. The die measures 2.36 × 1.88 mm, is 250 μm thick, and is wire bonded into a flex circuit assembly measuring 4.6 × 6.8 mm.

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Publications
04/04/25 | A Bayesian Model to Count the Number of Two-State Emitters in a Diffraction Limited Spot.
Hillsley A, Stein J, Tillberg PW, Stern DL, Funke J
Nano Lett. 2025 Apr 04:. doi: 10.1021/acs.nanolett.4c06304

We address the problem of inferring the number of independently blinking fluorescent light emitters, when only their combined intensity contributions can be observed. This problem occurs regularly in light microscopy of objects smaller than the diffraction limit, where one wishes to count the number of fluorescently labeled subunits. Our proposed solution directly models the photophysics of the system, as well as the blinking kinetics of the fluorescent emitters as a fully differentiable hidden Markov model, estimating a posterior distribution of the total number of emitters. We show that our model is more accurate and increases the range of countable subunits by a factor of 2 compared to current state-of-the-art methods. Furthermore, we demonstrate that our model can be used to investigate the effect of blinking kinetics on counting ability and therefore can inform optimal experimental conditions.

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