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2006
Ahrens MB, Huys QJM, Paninski L.  2006.  Large-scale biophysical parameter estimation in single neurons via constrained linear regression.. Neural Information Processing Systems. 18
Romani S, Amit DJ, Mongillo G.  2006.  Mean-field analysis of selective persistent activity in presence of short-term synaptic depression.. Journal of Computational Neuroscience. 20(2):201-17.
Thaw P, Sedelnikova SE, Muranova T, Wiese S, Ayora S, Alonso JC, Brinkman AB, Akerboom J, van der Oost J, Rafferty JB.  2006.  Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family.. Nucleic Acids Research. 34(5):1439-49.
Thaw P, Sedelnikova SE, Muranova T, Wiese S, Ayora S, Alonso JC, Brinkman AB, Akerboom J, van der Oost J, Rafferty JB.  2006.  Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family.. Nucleic Acids Research. 34(5):1439-49.
Thaw P, Sedelnikova SE, Muranova T, Wiese S, Ayora S, Alonso JC, Brinkman AB, Akerboom J, van der Oost J, Rafferty JB.  2006.  Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family.. Nucleic Acids Research. 34(5):1439-49.
2005
Brouns SJJ, Wu H, Akerboom J, Turnbull AP, de Vos WM, van der Oost J.  2005.  Engineering a selectable marker for hyperthermophiles.. The Journal of Biological Chemistry. 280(12):11422-31.
Pavlopoulos A, Averof M.  2005.  Establishing genetic transformation for comparative developmental studies in the crustacean Parhyale hawaiensis.. Proceedings of the National Academy of Sciences of the United States of America. 102(22):7888-93.
Ahammad P, Harmon C, Hammonds AS, Sastry S, Rubin GM.  2005.  Joint nonparametric alignment for analyzing spatial gene expression patterns of Drosophila imaginal discs.. IEEE Conference on Computer Vision and Pattern Recognition. 2:755-60.
Mongillo G, Curti E, Romani S, Amit DJ.  2005.  Learning in realistic networks of spiking neurons and spike-driven plastic synapses.. European Journal of Neuroscience. 21(11):3143-60.
Han Y-J, Wysocki LM, Thanawala MS, Siegrist T, Aizenberg J.  2005.  Template-dependent morphogenesis of oriented calcite crystals in the presence of magnesium ions.. Angewandte Chemie (International ed. in English). 44(16):2386-90.
2004
Shefi O, Harel A, Chklovskii DB, Ben-Jacob E, Ayali A.  2004.  Biophysical constraints on neuronal branching.. Neurocomputing. 58-60:487-95.
Andrasfalvy BK, Magee JC.  2004.  Changes in AMPA receptor currents following LTP induction on rat CA1 pyramidal neurones.. The Journal of Physiology. 559(Pt 2):543-54.
Avidor-Reiss T, Maer AM, Koundakjian E, Polyanovsky A, Keil T, Subramaniam S, Zuker CS.  2004.  Decoding cilia function: defining specialized genes required for compartmentalized cilia biogenesis.. Cell. 117(4):527-39.
Pavlopoulos A, Berghammer AJ, Averof M, Klingler M.  2004.  Efficient transformation of the beetle Tribolium castaneum using the Minos transposable element: quantitative and qualitative analysis of genomic integration events.. Genetics. 167:737-46.
Koyama M, Hasegawa I, Osada T, Adachi Y, Nakahara K, Miyashita Y.  2004.  Functional magnetic resonance imaging of macaque monkeys performing visually guided saccade tasks: comparison of cortical eye fields with humans.. Neuron. 41:795-807.
Learned-Miller EG, Ahammad P.  2004.  Joint MRI bias removal using entropy minimization across images.. Neural Information Processing Systems Conference.
Reigl M, Alon U, Chklovskii DB.  2004.  Search for computational modules in the C. elegans brain.. BMC Biology. 2:25.
Berrisford JM, Akerboom J, Brouns S, Sedelnikova SE, Turnbull AP, van der Oost J, Salmon L, Hardré R, Murray IA, G Blackburn M et al..  2004.  The structures of inhibitor complexes of Pyrococcus furiosus phosphoglucose isomerase provide insights into substrate binding and catalysis.. Journal of Molecular Biology. 343(3):649-57.
2003
Turaga SC, Auerbach SM.  2003.  Calculating free energies for diffusion in tight-fitting zeolite-guest systems: Local normal-mode Monte Carlo. Journal of Chemical Physics. 118(6512)
Berrisford JM, Akerboom J, Turnbull AP, de Geus D, Sedelnikova SE, Staton I, McLeod CW, Verhees CH, van der Oost J, Rice DW et al..  2003.  Crystal structure of Pyrococcus furiosus phosphoglucose isomerase. Implications for substrate binding and catalysis.. The Journal of Biological Chemistry. 278(35):33290-7.
Magee JA, Abdulkadir SA, Milbrandt J.  2003.  Haploinsufficiency at the Nkx3.1 locus. A paradigm for stochastic, dosage-sensitive gene regulation during tumor initiation.. Cancer Cell. 3(3):273-83.
Andrasfalvy BK, Smith MA, Borchardt T, Sprengel R, Magee JC.  2003.  Impaired regulation of synaptic strength in hippocampal neurons from GluR1-deficient mice.. The Journal of Physiology. 552(Pt 1):35-45.
Boutlis CS, Hobbs MR, Marsh RL, Misukonis MA, Tkachuk AN, Lagog M, Booth J, Granger DL, Bockarie MJ, Mgone CS et al..  2003.  Inducible nitric oxide synthase (NOS2) promoter CCTTT repeat polymorphism: relationship to in vivo nitric oxide production/NOS activity in an asymptomatic malaria-endemic population.. The American Journal of Tropical Medicine and Hygiene. 69:569-73.
Schild L, Reinheckel T, Reiser M, Horn TFW, Wolf G, Augustin W.  2003.  Nitric oxide produced in rat liver mitochondria causes oxidative stress and impairment of respiration after transient hypoxia.. The FASEB Journal: Official Publication of the Federation of American Societies for Experimental Biology. 17:2194-201.
Akerboom J, Turnbull AP, Hargreaves D, Fisher M, de Geus D, Sedelnikova SE, Berrisford JM, Baker PJ, Verhees CH, van der Oost J et al..  2003.  Purification, crystallization and preliminary crystallographic analysis of phosphoglucose isomerase from the hyperthermophilic archaeon Pyrococcus furiosus.. Acta Crystallographica. Section D, Biological Crystallography. 59:1822-3.