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2013
Chung CS, Hutchinson KR, Methawasin M, Saripalli C, Smith JE, Hidalgo CG, Luo X, Labeit S, Guo C, Granzier HL.  2013.  Shortening of the elastic tandem immunoglobulin segment of titin leads to diastolic dysfunction.. Circulation. 128(1):19-28.
Sgro AE, Bajjalieh SM, Chiu DT.  2013.  Single-axonal organelle analysis method reveals new protein-motor associations.. ACS Chem Neurosci. 4(2):277-84.
Hocine S, Raymond P, Zenklusen D, Chao JA, Singer RH.  2013.  Single-molecule analysis of gene expression using two-color RNA labeling in live yeast.. Nature Methods. 10(2):119-21.
Hermundstad AM, Bassett DS, Brown KS, Aminoff EM, Clewett D, Freeman S, Frithsen A, Johnson A, Tipper CM, Miller MB et al..  2013.  Structural foundations of resting-state and task-based functional connectivity in the human brain.. Proceedings of the National Academy of Sciences of the United States of America. 110(15):6169-74.
Hermundstad AM, Bassett DS, Brown KS, Aminoff EM, Clewett D, Freeman S, Frithsen A, Johnson A, Tipper CM, Miller MB et al..  2013.  Structural foundations of resting-state and task-based functional connectivity in the human brain.. Proceedings of the National Academy of Sciences of the United States of America. 110(15):6169-74.
Crocker J, Stern DL.  2013.  TALE-mediated modulation of transcriptional enhancers in vivo.. Nature Methods. 10(8):762-7.
Rah J-C, Bas E, Colonell J, Mishchenko Y, Karsh B, Fetter RD, Myers EW, Chklovskii DB, Svoboda K, Harris TD et al..  2013.  Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography.. Frontiers in Neural Circuits. 7:177.
Rah J-C, Bas E, Colonell J, Mishchenko Y, Karsh B, Fetter RD, Myers EW, Chklovskii DB, Svoboda K, Harris TD et al..  2013.  Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography.. Frontiers in Neural Circuits. 7:177.
Cardona A..  2013.  Towards semi-automatic reconstruction of neural circuits.. Neuroinformatics. 11(1):31-3.
Paraq T, Butler V, Chklovskii D.  2013.  Tracking multiple neurons on worm images.. Medical Imaging 2013: Image Processing. 8669:86692P.
Coggill P, Eberhardt RY, Finn RD, Chang Y, Jaroszewski L, Godzik A, Das D, Xu Q, Axelrod HL, Aravind L et al..  2013.  Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila.. BMC Bioinformatics. 14:265.
Coggill P, Eberhardt RY, Finn RD, Chang Y, Jaroszewski L, Godzik A, Das D, Xu Q, Axelrod HL, Aravind L et al..  2013.  Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila.. BMC Bioinformatics. 14:265.
Chen T-W, Wardill TJ, Sun Y, Pulvar SR, Renninger SL, Baohan A, Schreiter ER, Kerr RA, Orger MB, Jayaraman V et al..  2013.  Ultrasensitive fluorescent proteins for imaging neuronal activity.. Nature. 499:295-300.
Katz P, Grillner S, Wilson R, Borst A, Greenspan R, Buzsáki G, Martin K, Marder E, Kristan W, Friedrich R et al..  2013.  Vertebrate versus invertebrate neural circuits.. Current Biology. 23(12):R504-6.
Takemura S-ya, Bharioke A, Lu Z, Nern A, Vitaladevuni, iv S, Rivlin PK, Katz WT, Olbris DJ, Plaza SM, Winston P et al..  2013.  A visual motion detection circuit suggested by Drosophila connectomics.. Nature. 500(7461):175–81.
Takemura S-ya, Bharioke A, Lu Z, Nern A, Vitaladevuni, iv S, Rivlin PK, Katz WT, Olbris DJ, Plaza SM, Winston P et al..  2013.  A visual motion detection circuit suggested by Drosophila connectomics.. Nature. 500(7461):175–81.
2012
Clack NG, O’Connor DH, Huber D, Petreanu L, Hires A, Peron S, Svoboda K, Myers EW.  2012.  Automated tracking of whiskers in videos of head fixed rodents.. PLoS Computational Biology. 8:e1002591.
Cox S, Rosten E, Monypenny J, Jovanovic-Talisman T, Burnette DT, Lippincott-Schwartz J, Jones GE, Heintzmann R.  2012.  Bayesian localization microscopy reveals nanoscale podosome dynamics.. Nature methods. 9(2):195-200.
Brilot AF, Chen JZ, Cheng A, Pan J, Harrison SC, Potter CS, Carragher B, Henderson R, Grigorieff N.  2012.  Beam-induced motion of vitrified specimen on holey carbon film.. Journal of Structural Biology. 177(3):630-7.
Brilot AF, Chen JZ, Cheng A, Pan J, Harrison SC, Potter CS, Carragher B, Henderson R, Grigorieff N.  2012.  Beam-induced motion of vitrified specimen on holey carbon film.. Journal of Structural Biology. 177(3):630-7.
Brilot AF, Chen JZ, Cheng A, Pan J, Harrison SC, Potter CS, Carragher B, Henderson R, Grigorieff N.  2012.  Beam-induced motion of vitrified specimen on holey carbon film.. Journal of Structural Biology. 177(3):630-7.
Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B et al..  2012.  Biological imaging software tools.. Nature Methods. 9(7):697-710.
Larochelle A, Gillette JM, Desmond R, Ichwan B, Cantilena A, Cerf A, A Barrett J, Wayne AS, Lippincott-Schwartz J, Dunbar CE.  2012.  Bone marrow homing and engraftment of human hematopoietic stem and progenitor cells is mediated by a polarized membrane domain.. Blood. 119(8):1848-55.
Larochelle A, Gillette JM, Desmond R, Ichwan B, Cantilena A, Cerf A, A Barrett J, Wayne AS, Lippincott-Schwartz J, Dunbar CE.  2012.  Bone marrow homing and engraftment of human hematopoietic stem and progenitor cells is mediated by a polarized membrane domain.. Blood. 119(8):1848-55.
Larochelle A, Gillette JM, Desmond R, Ichwan B, Cantilena A, Cerf A, A Barrett J, Wayne AS, Lippincott-Schwartz J, Dunbar CE.  2012.  Bone marrow homing and engraftment of human hematopoietic stem and progenitor cells is mediated by a polarized membrane domain.. Blood. 119(8):1848-55.