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2024
Phan TV, Mattingly HH, Vo L, Marvin JS, Looger LL, Emonet T.  2024.  Direct measurement of dynamic attractant gradients reveals breakdown of the Patlak-Keller-Segel chemotaxis model. Proceedings of the National Academy of Sciences.
Team TMouseLight, Ferreira TA, Eddison M, Copeland M, Lay M, Tenshaw E, Weldon M, Schauder D, Olbris DJ, Rokicki K et al..  2024.  Discovery of neuronal cell types by pairing whole cell reconstructions with RNA expression profiles. bioRxiv.
Patel A, Gonzalez V, Menon T, Shvartsman SY, Burdine R, Avdeeva M.  2024.  Disrupted developmental signaling induces novel transcriptional states. bioRxiv.
Beltrán FA, L LTorres-Dí, Troncoso-Escudero P, Villalobos-González J, Mayorga-Weber G, Lara M, Covarrubias-Pinto A, Valdivia S, Vicencio I, Papic E et al..  2024.  Distinct roles of ascorbic acid in extracellular vesicles and free form: Implications for metabolism and oxidative stress in presymptomatic Huntington's disease.. Free Radic Biol Med. 227:521-535.
Jacob LPL, Bailes SM, Williams SD, Stringer C, Lewis LD.  2024.  Distributed fMRI dynamics predict distinct EEG rhythms across sleep and wakefulness.. bioRxiv.
Chou HTing, Valencia F, Alexander JC, Bell ADavis, Deb D, Pollard DA, Paaby AB.  2024.  Diversification of small RNA pathways underlies germline RNA interference incompetence in wild Caenorhabditis elegans strains.. Genetics. 226(1)
Shiu PK, Sterne GR, Spiller N, Franconville R, Sandoval A, Zhou J, Simha N, Kang CHyuk, Yu S, Kim JS et al..  2024.  A Drosophila computational brain model reveals sensorimotor processing.. Nature. 634(8032):210-219.
Kim JMin, Carcamo CC, Jazani S, Xie Z, Feng XA, Poyton M, Holland KL, Grimm JB, Lavis LD, Ha T et al..  2024.  Dynamic 1D Search and Processive Nucleosome Translocations by RSC and ISW2 Chromatin Remodelers. eLife.
Huang Y-C, Chen H-C, Lin Y-T, Lin S-T, Zheng Q, Abdelfattah AS, Lavis LD, Schreiter ER, Lin B-J, Chen T-W.  2024.  Dynamic assemblies of parvalbumin interneurons in brain oscillations.. Neuron.
2025
Zocchi D, Nguyen M, Marquez-Legorreta E, Siwanowicz I, Singh C, Prober DA, Hillman EMC, Ahrens MB.  2025.  Days-old zebrafish rapidly learn to recognize threatening agents through noradrenergic and forebrain circuits.. Curr Biol. 35(1):163-176.e4.
Chen Y, Yserentant K, Hong K, Kuang Y, Bhowmick A, Charles-Orszag A, Lord SJ, Lu L, Hou K, Mann SI et al..  2025.  De novo designed bright, hyperstable rhodamine binders for fluorescence microscopy. bioRxiv.
Guo M, Wu Y, Hobson CM, Su Y, Qian S, Krueger E, Christensen R, Kroeschell G, Bui J, Chaw M et al..  2025.  Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopyAbstract. Nature Communications. 16(1)
Schneider MC, Johnson C, Allier C, Heinrich L, Adjavon D, Husic J, La Riviere P, Saalfeld S, Shroff H.  2025.  DeepPD: Joint Phase and Object Estimation from Phase Diversity with Neural Calibration of a Deformable Mirror. arXiv.
Gandin V, Kim J, Yang L-Z, Lian Y, Kawase T, Hu A, Rokicki K, Fleishman G, Tillberg P, Castrejon AAguilera et al..  2025.  Deep-tissue transcriptomics and subcellular imaging at high spatial resolution. Science.
Mohar B, Michel G, Wang Y-Z, Hernandez V, Grimm JB, Park J-Y, Patel R, Clarke M, Brown TA, Bergmann C et al..  2025.  DELTA: a method for brain-wide measurement of synaptic protein turnover reveals localized plasticity during learning.. Nat Neurosci.
Park P, Wong-Campos D, Itkis DG, Lee BHun, Qi Y, Davis H, Antin B, Pasarkar A, Grimm JB, Plutkis SE et al..  2025.  Dendritic excitations govern back-propagation via a spike-rate accelerometer. Nature Communications. 16(1)
Wang X, Arpino G, Mohseni A, Bleck CKE, Wu L-G.  2025.  Dense-core vesicles contain exosomes in secretory cells.. Biophys J.
Aaron J, Chew T-L.  2025.  De-risking transformative microscopy technologies for broad adoption.. J Microsc.
Espinosa-Medina I.  2025.  Design and Generation of TEMPO Reagents for Sequential Labeling and Manipulation of Vertebrate Cell Lineages.. Methods Mol Biol. 2886:327-353.
Castro P.S, Tomasev N., Anand A., Sharma N., Mohanta R., Perlin K., Jain S., Levin K., Éltető N., Dabney W. et al..  2025.  Discovering Symbolic Cognitive Models from Human and Animal Behavior.. bioRxiv.