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2025
Petkova MD, Januszewski M, Blakely T, Herrera KJ, Schuhknecht GFP, Tiller R, Choi J, Schalek RL, Boulanger-Weill J, Peleg A et al..  2025.  A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. bioRxiv.
Keller JA, Kwak IS, Stark AK, Pachitariu M, Branson K, Dudman JT.  2025.  Cortical control of innate behavior from subcortical demonstration. bioRxiv.
Lollar MJ, Kim E, Stern DL, Pool JE.  2025.  Courtship song differs between African and European populations of Drosophila melanogaster and involves a strong effect locus. G3 Genes|Genomes|Genetics.
Pachitariu M, Zhong L, Gracias A, Minisi A, Lopez C, Stringer C.  2025.  A critical initialization for biological neural networks. bioRxiv.
Roberts R, Giez C, Dhawan S, Pang S, Randel N, Zhiyuan L, Gong H, Dekens L, DiFrisco J, C Xu S et al..  2025.  Cross-species comparative connectomics reveals the evolution of an olfactory circuit. bioRxiv.
Guan Y, Yu Y, Gao SMax, Ding L, Zhao Q, Wang M.  2025.  Cross-Tissue Coordination between SLC Nucleoside Transporters Regulates Reproduction in Caenorhabditis elegans. PLoS Genet.
Zocchi D, Nguyen M, Marquez-Legorreta E, Siwanowicz I, Singh C, Prober DA, Hillman EMC, Ahrens MB.  2025.  Days-old zebrafish rapidly learn to recognize threatening agents through noradrenergic and forebrain circuits.. Curr Biol. 35(1):163-176.e4.
Chen Y, Yserentant K, Hong K, Kuang Y, Bhowmick A, Charles-Orszag A, Lord SJ, Lu L, Hou K, Mann SI et al..  2025.  De novo designed bright, hyperstable rhodamine binders for fluorescence microscopy. bioRxiv.
Guo M, Wu Y, Hobson CM, Su Y, Qian S, Krueger E, Christensen R, Kroeschell G, Bui J, Chaw M et al..  2025.  Deep learning-based aberration compensation improves contrast and resolution in fluorescence microscopyAbstract. Nature Communications. 16(1)
Schneider MC, Johnson C, Allier C, Heinrich L, Adjavon D, Husic J, La Riviere P, Saalfeld S, Shroff H.  2025.  DeepPD: Joint Phase and Object Estimation from Phase Diversity with Neural Calibration of a Deformable Mirror. arXiv.
Gandin V, Kim J, Yang L-Z, Lian Y, Kawase T, Hu A, Rokicki K, Fleishman G, Tillberg P, Castrejon AAguilera et al..  2025.  Deep-tissue transcriptomics and subcellular imaging at high spatial resolution. Science.
Mohar B, Michel G, Wang Y-Z, Hernandez V, Grimm JB, Park J-Y, Patel R, Clarke M, Brown TA, Bergmann C et al..  2025.  DELTA: a method for brain-wide measurement of synaptic protein turnover reveals localized plasticity during learning.. Nat Neurosci.
Park P, Wong-Campos D, Itkis DG, Lee BHun, Qi Y, Davis H, Antin B, Pasarkar A, Grimm JB, Plutkis SE et al..  2025.  Dendritic excitations govern back-propagation via a spike-rate accelerometer. Nature Communications. 16(1)
Wang X, Arpino G, Mohseni A, Bleck CKE, Wu L-G.  2025.  Dense-core vesicles contain exosomes in secretory cells.. Biophys J.
Aaron J, Chew T-L.  2025.  De-risking transformative microscopy technologies for broad adoption.. J Microsc.
Espinosa-Medina I.  2025.  Design and Generation of TEMPO Reagents for Sequential Labeling and Manipulation of Vertebrate Cell Lineages.. Methods Mol Biol. 2886:327-353.
Castro P.S, Tomasev N., Anand A., Sharma N., Mohanta R., Perlin K., Jain S., Levin K., Éltető N., Dabney W. et al..  2025.  Discovering Symbolic Cognitive Models from Human and Animal Behavior.. bioRxiv.
Flierman NA, Koay SAnn, van Hoogstraten WS, Ruigrok TJH, Roelfsema P, Badura A, De Zeeuw CI.  2025.  Encoding of cerebellar dentate neuron activity during visual attention in rhesus macaques.. Elife. 13
Kim D, Park P, Li X, J Wong-Campos D, Tian H, Moult EM, Grimm JB, Lavis LD, Cohen AE.  2025.  EPSILON: a method for pulse-chase labeling to probe synaptic AMPAR exocytosis during memory formation.. Nat Neurosci.
Moret A, Farrants H, Fan R, Zingg K, Gee CE, Oertner TG, Rangaraju V, Schreiter ER, de Juan-Sanz J.  2025.  An expanded palette of bright and photostable organellar Ca2+ sensors. bioRxiv.
Dalangin R, Jia BZ, Qi Y, Aggarwal A, Sakoi K, Drobizhev M, Molina RS, Patel R, Abdelfattah AS, Zheng J et al..  2025.  Far-red fluorescent genetically encoded calcium ion indicators.. Nat Commun. 16(1):3318.
Mi X, Chen ABo-Yuan, Duarte D, Carey E, Taylor CR, Braaker PN, Bright M, Almeida RG, Lim J-X, Ruetten VMS et al..  2025.  Fast, accurate, and versatile data analysis platform for the quantification of molecular spatiotemporal signals.. Cell.
Moore AS, Krug T, Hansen SB, Ludlow AV, Grimm JB, Ayala AX, Plutkis SE, Wang N, Goldman RD, Medalia O et al..  2025.  FilaBuster: A Strategy for Rapid, Specific, and Spatiotemporally Controlled Intermediate Filament Disassembly. bioRxiv.
Makarova AA, Chua NJ, Diakova AV, Desyatirkina IA, Gunn P, Pang S, C Xu S, Hess HF, Chklovskii DB, Polilov AA.  2025.  The first complete 3D reconstruction and morphofunctional mapping of an insect eye. eLife.
Makarova AA, Chua NJ, Diakova AV, Desyatirkina IA, Gunn P, Pang S, C Xu S, Hess H, Chklovskii DB, Polilov AA.  2025.  The first complete 3D reconstruction and morphofunctional mapping of an insect eye.