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2025
Suarez-Gomez D, Perez-Rosas NC, Miranda-Contreras GI, Colom-Braña SR, Zhang W, Mim MSahir, Tan S, Gazzo D, Tepole ABuganza, Deng Q et al..  2025.  CalciumInsights: An Open-Source, Tissue-Agnostic Graphical Interface for High-Quality Analysis of Calcium Signals. bioRxiv.
Petkova MD, Januszewski M, Blakely T, Herrera KJ, Schuhknecht GFP, Tiller R, Choi J, Schalek RL, Boulanger-Weill J, Peleg A et al..  2025.  A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. bioRxiv.
Park P, Wong-Campos D, Itkis DG, Lee BHun, Qi Y, Davis H, Antin B, Pasarkar A, Grimm JB, Plutkis SE et al..  2025.  Dendritic excitations govern back-propagation via a spike-rate accelerometer. Nature Communications. 16(1)
Bates AShakeel, Phelps JS, Kim M, Yang HH, Matsliah A, Ajabi Z, Perlman E, Delgado KM, Osman MAbdal Moni, Salmon CK et al..  2025.  Distributed control circuits across a brain-and-cord connectome. bioRxiv.
Di Fratta G, Innerberger M, Praetorius D, Slastikov V.  2025.  Energy minimization for skyrmions on planar thin films. arXiv.
Vohra SK, Eberle M, Boulanger-Weill J, Petkova MD, Schuhknecht GFP, Herrera KJ, Kämpf F, Ruetten VMS, Lichtman JW, Engert F et al..  2025.  Fishexplorer: A multimodal cellular atlas platform for neuronal circuit dissection in larval zebrafish. bioRxiv.
Sakthivelu V, Schmitt A, Odenthal F, Ndoci K, Touet M, Shaib AH, Chihab A, Wani GA, Nieper P, Hartmann GG et al..  2025.  Functional synapses between neurons and small cell lung cancer.. Nature.
Sakthivelu V, Schmitt A, Odenthal F, Ndoci K, Touet M, Shaib AH, Chihab A, Wani GA, Nieper P, Hartmann GG et al..  2025.  Functional synapses between neurons and small cell lung cancer.. Nature.
Aggarwal A, Negrean A, Chen Y, Iyer R, Reep D, Liu A, Palutla A, Xie ME, MacLennan BJ, Hagihara KM et al..  2025.  Glutamate indicators with increased sensitivity and tailored deactivation rates. Nat Methods.
Podgorski K, Aggarwal A, Negrean A, Chen Y, Iyer R, Reep D, Liu A, Palutla A, Xie M, Maclennan B et al..  2025.  Glutamate indicators with increased sensitivity and tailored deactivation rates. Research Square.
Ruetten VMS, Zheng W, Siwanowicz I, Mensh BD, Eddison M, Hu A, Chi Y, Lemire AL, Guo C, Kadobianskyi M et al..  2025.  Imaging cellular activity simultaneously across all organs of a vertebrate reveals body-wide circuits. bioRxiv.
Fiore A, Yu G, Northey JJ, Patel R, Ravenscroft TA, Ikegami R, Kolkman W, Kumar P, Dilan TL, Ruetten VMS et al..  2025.  Live imaging of the extracellular matrix with a glycan-binding fluorophore.. Nat Methods.
Miyoshi T, Vishwasrao HD, Belyantseva IA, Sajeevadathan M, Ishibashi Y, Adadey SM, Harada N, Shroff H, Friedman TB.  2025.  Live-cell single-molecule fluorescence microscopy for protruding organelles reveals regulatory mechanisms of MYO7A-driven cargo transport in stereocilia of inner ear hair cells. Nat Commun.
Close K, He Y, Jeter J, Ihrke G, Eddison M.  2025.  Multiplex Detection of Gene Expression in the Intact Drosophila Brain Using Expansion-Assisted Iterative Fluorescence In Situ Hybridization.. J Vis Exp. (219)
Denis S, Van Deuren V, Frecot DI, Rothbauer U, Ismail S, Tebo AG, Dedecker P.  2025.  NanoBlocks: creating fluorescent biosensors from affinity binders using competitive binding. bioRxiv.
Yacoub M, Iqbal F, Khan Z, Syeda A, Lijnse T, Syed NI.  2025.  Neuronal growth patterns and synapse formation are mediated by distinct activity-dependent mechanisms.. Sci Rep. 15(1):17338.
Nardin M, Wang N, Elziny S, Boyer C, Pjanovic V, Schuster L, Boklund P, Lindo S, Morris K, Ilanges A et al..  2025.  Reconstructing a physiological state space via chronic jugular microdialysis in freely moving mice. bioRxiv.
Preibisch S, Innerberger M, León-Periñán D, Karaiskos N, Rajewsky N.  2025.  Scalable image-based visualization and alignment of spatial transcriptomics datasets. Cell Syst.
Uchigashima M, Iguchi R, Fujii K, Shiku K, Kumar P, Liu X, Isogai M, Hoshino C, Abe M, Nozumi M et al..  2025.  Single-cell synaptome mapping of endogenous protein subpopulations in mammalian brain.. Nat Commun. 16(1):9705.
Uchigashima M, Iguchi R, Fujii K, Shiku K, Kumar P, Liu X, Isogai M, Hoshino C, Abe M, Nozumi M et al..  2025.  Single-cell synaptome mapping of endogenous protein subpopulations in mammalian brain.. Nat Commun. 16(1):9705.
Uchigashima M, Iguchi R, Fujii K, Shiku K, Kumar P, Liu X, Isogai M, Hoshino C, Abe M, Nozumi M et al..  2025.  Single-cell synaptome mapping of endogenous protein subpopulations in mammalian brain.. Nat Commun. 16(1):9705.