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2017
Pachitariu M, Sahani M.  2017.  Visual motion computation in recurrent neural networks.. bioRxiv. :099101.
Liu H, Dong P, Ioannou MS, Li L, Shea J, H Pasolli A, Grimm JB, Rivlin PK, Lavis LD, Koyama M et al..  2017.  Visualizing long-term single-molecule dynamics in vivo by stochastic protein labeling.. Proceedings of the National Academy of Sciences of the United States of America. 115(2):343-8.
Song A, Charles AS, Koay SAnn, Gauthier JL, Thiberge SY, Pillow JW, Tank DW.  2017.  Volumetric two-photon imaging of neurons using stereoscopy (vTwINS). Nature Methods. 14(4):420-426.
Hildebrand DGrant Colb, Cicconet M, Torres RMiguel, Choi W, Quan TMinh, Moon J, Wetzel AWillis, Champion AScott, Graham BJesse, Randlett O et al..  2017.  Whole-brain serial-section electron microscopy in larval zebrafish.. Nature. 545(7654):345-349.
Hildebrand DGrant Colb, Cicconet M, Torres RMiguel, Choi W, Quan TMinh, Moon J, Wetzel AWillis, Champion AScott, Graham BJesse, Randlett O et al..  2017.  Whole-brain serial-section electron microscopy in larval zebrafish.. Nature. 545(7654):345-349.
2018
Tian L, Or G, Wang Y, Shi G, Wang Y, Sun J, Papadopoulos S, Broussard G, Unger E, Deng W et al..  2018.  Aberrant calcium signaling in astrocytes inhibits neuronal excitability in a human Down syndrome stem cell model.. Cell Reports. 24(2):355-65.
Pinto L, Koay SA, Engelhard B, Yoon AM, Deverett B, Thiberge SY, Witten IB, Tank DW, Brody CD.  2018.  An Accumulation-of-Evidence Task Using Visual Pulses for Mice Navigating in Virtual Reality. Frontiers in Behavioral Neuroscience. 12
Rastogi C, H Rube T, Kribelbauer JF, Crocker J, Loker RE, Martini GD, Laptenko O, Freed-Pastor WA, Prives C, Stern DL et al..  2018.  Accurate and sensitive quantification of protein-DNA binding affinity.. Proceedings of the National Academy of Sciences of the United States of America. 115(16):E3692-701.
Padilla-Rodriguez M, Parker SS, Adams DG, Westerling T, Puleo JI, Watson AW, Hill SM, Noon M, Gaudin R, Aaron J et al..  2018.  The actin cytoskeletal architecture of estrogen receptor positive breast cancer cells suppresses invasion.. Nature Communications. 9(1):2980.
Padilla-Rodriguez M, Parker SS, Adams DG, Westerling T, Puleo JI, Watson AW, Hill SM, Noon M, Gaudin R, Aaron J et al..  2018.  The actin cytoskeletal architecture of estrogen receptor positive breast cancer cells suppresses invasion.. Nature Communications. 9(1):2980.
Padilla-Rodriguez M, Parker SS, Adams DG, Westerling T, Puleo JI, Watson AW, Hill SM, Noon M, Gaudin R, Aaron J et al..  2018.  The actin cytoskeletal architecture of estrogen receptor positive breast cancer cells suppresses invasion.. Nature Communications. 9(1):2980.
Plaza SM, Funke J.  2018.  Analyzing image segmentation for connectomics.. Frontiers in Neural Circuits. 12:102.
McArthur K, Whitehead LW, Heddleston JM, Li L, Padman BS, Oorschot V, Geoghegan ND, Chappaz S, Davidson S, San Chin H et al..  2018.  BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis.. Science (New York, N.Y.). 359(6378)
Vladimirov N, Wang C, Höckendorf B, Pujala A, Tanimoto M, Mu Y, Yang C-T, Wittenbach J, Freeman J, Preibisch S et al..  2018.  Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.. Nature Methods. 15(12):1117-1125.
Vladimirov N, Wang C, Höckendorf B, Pujala A, Tanimoto M, Mu Y, Yang C-T, Wittenbach J, Freeman J, Preibisch S et al..  2018.  Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.. Nature Methods. 15(12):1117-1125.
Giovannucci A, Friedrich J, Gunn P, Kalfon J, Koay SAnn, Taxidis J, Najafi F, Gauthier JL, Zhou P, Tank DW et al..  2018.  CalmAn: An open source tool for scalable Calcium Imaging data Analysis. bioRxiv.
Hooks BM, Papale AE, Paletzki R, Feroze M, Eastwood BS, Couey JJ, Winnubst J, Chandrashekar J, Gerfen CR.  2018.  Cell type-specific variation of somatotopic precision across corticostriatal projections. . bioRxiv.
Hooks BM, Papale AE, Paletzki R, Feroze M, Eastwood BS, Couey JJ, Winnubst J, Chandrashekar J, Gerfen CR.  2018.  Cell type-specific variation of somatotopic precision across corticostriatal projections. . bioRxiv.
Pedrosa AT, Nogueira AT, Thwaites TR, Aaron J, Chew T-L, Carabeo RA.  2018.  The Chlamydia type III effector TarP alters the dynamics and organization of host focal adhesions.. bioRxiv.
Tebo AG, Pimenta FM, Zoumpoulaki M, Kikuti C, Sirkia H, Plamont M-A, Houdusse A, Gautier A.  2018.  Circularly Permuted Fluorogenic Proteins for the Design of Modular Biosensors.. ACS Chemical Biology. 13:2392–2397.
Tebo AG, Pimenta FM, Zoumpoulaki M, Kikuti C, Sirkia H, Plamont M-A, Houdusse A, Gautier A.  2018.  Circularly Permuted Fluorogenic Proteins for the Design of Modular Biosensors.. ACS Chemical Biology. 13:2392–2397.
Dolan M-J, Belliart-Guérin G, Bates AShakeel, Frechter S, Lampin-Saint-Amaux A, Aso Y, Roberts RJV, Schlegel P, Wong A, Hammad A et al..  2018.  Communication from learned to innate olfactory processing centers is required for memory retrieval in Drosophila.. Neuron. 100(3):651-68.
Dolan M-J, Belliart-Guérin G, Bates AShakeel, Frechter S, Lampin-Saint-Amaux A, Aso Y, Roberts RJV, Schlegel P, Wong A, Hammad A et al..  2018.  Communication from learned to innate olfactory processing centers is required for memory retrieval in Drosophila.. Neuron. 100(3):651-68.
Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P et al..  2018.  Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLOS Computational Biology. 14(5):e1006157.
Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P et al..  2018.  Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLOS Computational Biology. 14(5):e1006157.