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2021
Huisman M, Hammer M, Rigano A, Boehm U, Chambers JJ, Gaudreault N, North AJ, Pimentel JA, Sudar D, Bajcsy P et al..  2021.  A perspective on Microscopy Metadata: data provenance and quality control. arXiv.
Porter LL, Kim AK, Looger LL, Majumdar A, Starich M.  2021.  Pervasive fold switching in a ubiquitous protein superfamily.. bioRxiv.
Weinstein B, da Silva AR, Kouzoukas DE, Bose T, Kim G-J, Correa PA, Pondugula S, Lee YJ, Kim J, Carpenter DO.  2021.  Precision Mapping of COVID-19 Vulnerable Locales by Epidemiological and Socioeconomic Risk Factors, Developed Using South Korean Data.. International Journal of Environmental Research and Public Health. 18(2)
Deb D, Jiao Z, Chen AB, Broxton M, Ahrens MB, Podgorski K, Turaga SC.  2021.  Programmable 3D snapshot microscopy with Fourier convolutional networks.
Polilov AA, Makarova AA, Pang S, C Xu S, Hess H.  2021.  Protocol for preparation of heterogeneous biological samples for 3D electron microscopy: a case study for insects.. Scientific Reports. 11(1):4717.
Polilov AA, Makarova AA, Pang S, C Xu S, Hess H.  2021.  Protocol for preparation of heterogeneous biological samples for 3D electron microscopy: a case study for insects.. Scientific Reports. 11(1):4717.
Akam T, Lustig A, Rowland J, Kapanaiah SKT, Esteve-Agraz J, Panniello M, Marquez C, Kohl M, Kätzel D, Costa RM et al..  2021.  pyControl: Open source, Python based, hardware and software for controlling behavioural neuroscience experiments. bioRxiv.
Nelson G, Boehm U, Bagley S, Bajcsy P, Bischof J, Brown CM, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O et al..  2021.  QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy. Journal of Microscopy. 284(1):56-73.
Nelson G, Boehm U, Bagley S, Bajcsy P, Bischof J, Brown CM, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O et al..  2021.  QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy. Journal of Microscopy. 284(1):56-73.
Nelson G, Boehm U, Bagley S, Bajcsy P, Bischof J, Brown CM, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O et al..  2021.  QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy. Journal of Microscopy. 284(1):56-73.
Nelson G, Boehm U, Bagley S, Bajcsy P, Bischof J, Brown CM, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O et al..  2021.  QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy. Journal of Microscopy. 284(1):56-73.
Nelson G, Boehm U, Bagley S, Bajcsy P, Bischof J, Brown CM, Dauphin A, Dobbie IM, Eriksson JE, Faklaris O et al..  2021.  QUAREP-LiMi: A community-driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy. Journal of Microscopy. 284(1):56-73.
Hiramoto A, Jonaitis J, Niki S, Kohsaka H, Fetter RD, Cardona A, Pulver SR, Nose A.  2021.  Regulation of coordinated muscular relaxation in Drosophila larvae by a pattern-regulating intersegmental circuit.. Nature Communications. 12(1):2943.
Mishra S, Looger LL, Porter LL.  2021.  A sequence-based method for predicting extant fold switchers that undergo α-helix <-> β-strand transitions. Biopolymers. 112(10)
Fukudome A, Singh J, Mishra V, Reddem E, Martinez-Marquez F, Wenzel S, Yan R, Shiozaki M, Yu Z, Wang JChe-Yen et al..  2021.  Structure and RNA template requirements of RNA-DEPENDENT RNA POLYMERASE 2.. Proceedings of the National Academy of Sciences of the U.S.A.. 118(51)
Siegle JH, Jia X, Durand S, Gale S, Bennett C, Graddis N, Heller G, Ramirez TK, Choi H, Luviano JA et al..  2021.  Survey of spiking in the mouse visual system reveals functional hierarchy.. Nature. 592(7852):86-92(7852):86-92.
Siegle JH, Jia X, Durand S, Gale S, Bennett C, Graddis N, Heller G, Ramirez TK, Choi H, Luviano JA et al..  2021.  Survey of spiking in the mouse visual system reveals functional hierarchy.. Nature. 592(7852):86-92(7852):86-92.
Siegle JH, Jia X, Durand S, Gale S, Bennett C, Graddis N, Heller G, Ramirez TK, Choi H, Luviano JA et al..  2021.  Survey of spiking in the mouse visual system reveals functional hierarchy.. Nature. 592(7852):86-92(7852):86-92.
Espinosa-Medina I, Feliciano D, Belmonte-Mateos C, Garcia-Marques J, Foster B, Miyares RLinda, Pujades C, Koyama M, Lee T.  2021.  TEMPO: A system to sequentially label and genetically manipulate vertebrate cell lineages. bioRxiv.
Hammer M, Huisman M, Rigano A, Boehm U, Chambers JJ, Gaudreault N, North AJ, Pimentel JA, Sudar D, Bajcsy P et al..  2021.  Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.. bioRxiv.
Hammer M, Huisman M, Rigano A, Boehm U, Chambers JJ, Gaudreault N, North AJ, Pimentel JA, Sudar D, Bajcsy P et al..  2021.  Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.. Nature Methods. 18(12):1427-1440.
Ma D, Przybylski D, Abruzzi KC, Schlichting M, Li Q, Long X, Rosbash M.  2021.  A transcriptomic taxonomy of circadian neurons around the clock.. eLife. 10
Hückesfeld S, Schlegel P, Miroschnikow A, Schoofs A, Zinke I, Haubrich AN, Schneider-Mizell CM, Truman JW, Fetter RD, Cardona A et al..  2021.  Unveiling the sensory and interneuronal pathways of the neuroendocrine connectome in Drosophila.. eLife. 10
Gautier A, Jullien L, Li C, Plamont M-A, Tebo AG, Thauvin M, Volovitch M, Vriz S.  2021.  Versatile On-Demand Fluorescent Labeling of Fusion Proteins Using Fluorescence-Activating and Absorption-Shifting Tag (FAST).. Methods Mol Biol. 2350:253-265.
Cai C, Friedrich J, Singh A, M Eybposh H, Pnevmatikakis EA, Podgorski K, Giovannucci A.  2021.  VolPy: Automated and scalable analysis pipelines for voltage imaging datasets.. PLoS Computational Biology. 17(4):e1008806.