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2025
Januszewski M, Templier T, Hayworth KJeffrey, Peale D, Hess H.  2025.  Accelerating Neuron Reconstruction with PATHFINDER. bioRxiv.
Hillsley A, Stein J, Tillberg PW, Stern DL, Funke J.  2025.  A Bayesian Model to Count the Number of Two-State Emitters in a Diffraction Limited Spot.. Nano Lett.
Suarez-Gomez D, Perez-Rosas NC, Miranda-Contreras GI, Colom-Braña SR, Zhang W, Mim MSahir, Tan S, Gazzo D, Tepole ABuganza, Deng Q et al..  2025.  CalciumInsights: An Open-Source, Tissue-Agnostic Graphical Interface for High-Quality Analysis of Calcium Signals. bioRxiv.
Suarez-Gomez D, Perez-Rosas NC, Miranda-Contreras GI, Colom-Braña SR, Zhang W, Mim MSahir, Tan S, Gazzo D, Tepole ABuganza, Deng Q et al..  2025.  CalciumInsights: An Open-Source, Tissue-Agnostic Graphical Interface for High-Quality Analysis of Calcium Signals. bioRxiv.
Faini G, Tuffery M, Saleem A, Zhang L, Du F, Le Bourdelles G, Duroure K, Schreiter ER, Tanese D, Emiliani V et al..  2025.  CHLOK: a chemigenetic multicolor labeling system to visualize neuronal birthdate and circuit integration. Research Square.
Faini G, Tuffery M, Saleem A, Zhang L, Du F, Le Bourdelles G, Duroure K, Schreiter ER, Tanese D, Emiliani V et al..  2025.  CHLOK: a chemigenetic multicolor labeling system to visualize neuronal birthdate and circuit integration. Research Square.
Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al..  2025.  Chromatix: a differentiable, GPU-accelerated wave-optics library. bioRxiv.
Deb D, Both G-J, Bezzam E, Kohli A, Yang S, Chaware A, Allier C, Cai C, Anderberg G, M. Eybposh H et al..  2025.  Chromatix: a differentiable, GPU-accelerated wave-optics library. bioRxiv.
Pentimalli TMassimo, Schallenberg S, León-Periñán D, Legnini I, Theurillat I, Thomas G, Boltengagen A, Fritzsche S, Nimo J, Ruff L et al..  2025.  Combining spatial transcriptomics and ECM imaging in 3D for mapping cellular interactions in the tumor microenvironment.. Cell Syst. :101261.
Pentimalli TMassimo, Schallenberg S, León-Periñán D, Legnini I, Theurillat I, Thomas G, Boltengagen A, Fritzsche S, Nimo J, Ruff L et al..  2025.  Combining spatial transcriptomics and ECM imaging in 3D for mapping cellular interactions in the tumor microenvironment.. Cell Syst. :101261.
Stürner T, Brooks P, Capdevila LSerratosa, Morris BJ, Javier A, Fang S, Gkantia M, Cachero S, Beckett IR, Marin EC et al..  2025.  Comparative connectomics of Drosophila descending and ascending neurons.. Nature.
Stürner T, Brooks P, Capdevila LSerratosa, Morris BJ, Javier A, Fang S, Gkantia M, Cachero S, Beckett IR, Marin EC et al..  2025.  Comparative connectomics of Drosophila descending and ascending neurons.. Nature.
Erginkaya M, Cruz T, Brotas M, Steck K, Nern A, Torrão F, Varela N, Bock D, Reiser M, M Chiappe E.  2025.  A competitive disinhibitory network for robust optic flow processing in Drosophila. Nat Neurosci..
Cai C, Traubert O, Tormes-Vaquerano J, M Eybposh H, Turaga SC, Rodriguez-Romaguera J, Naumann EA, Pégard NC.  2025.  Compressive streak microscopy for fast sampling of fluorescent reporters of neural activity.. Neurophotonics. 12(2):025013.
Cai C, Traubert O, Tormes-Vaquerano J, M Eybposh H, Turaga SC, Rodriguez-Romaguera J, Naumann EA, Pégard NC.  2025.  Compressive streak microscopy for fast sampling of fluorescent reporters of neural activity.. Neurophotonics. 12(2):025013.
Cai C, Traubert O, Tormes-Vaquerano J, M Eybposh H, Turaga SC, Rodriguez-Romaguera J, Naumann EA, Pégard NC.  2025.  Compressive streak microscopy for fast sampling of fluorescent reporters of neural activity.. Neurophotonics. 12(2):025013.
Petkova MD, Januszewski M, Blakely T, Herrera KJ, Schuhknecht GFP, Tiller R, Choi J, Schalek RL, Boulanger-Weill J, Peleg A et al..  2025.  A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. bioRxiv.
Petkova MD, Januszewski M, Blakely T, Herrera KJ, Schuhknecht GFP, Tiller R, Choi J, Schalek RL, Boulanger-Weill J, Peleg A et al..  2025.  A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. bioRxiv.
Petkova MD, Januszewski M, Blakely T, Herrera KJ, Schuhknecht GFP, Tiller R, Choi J, Schalek RL, Boulanger-Weill J, Peleg A et al..  2025.  A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. bioRxiv.
Petkova MD, Januszewski M, Blakely T, Herrera KJ, Schuhknecht GFP, Tiller R, Choi J, Schalek RL, Boulanger-Weill J, Peleg A et al..  2025.  A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. bioRxiv.
Petkova MD, Januszewski M, Blakely T, Herrera KJ, Schuhknecht GFP, Tiller R, Choi J, Schalek RL, Boulanger-Weill J, Peleg A et al..  2025.  A connectomic resource for neural cataloguing and circuit dissection of the larval zebrafish brain. bioRxiv.
Gandin V, Kim J, Yang L-Z, Lian Y, Kawase T, Hu A, Rokicki K, Fleishman G, Tillberg P, Castrejon AAguilera et al..  2025.  Deep-tissue transcriptomics and subcellular imaging at high spatial resolution. Science.
Mohar B, Michel G, Wang Y-Z, Hernandez V, Grimm JB, Park J-Y, Patel R, Clarke M, Brown TA, Bergmann C et al..  2025.  DELTA: a method for brain-wide measurement of synaptic protein turnover reveals localized plasticity during learning.. Nat Neurosci.
Mohar B, Michel G, Wang Y-Z, Hernandez V, Grimm JB, Park J-Y, Patel R, Clarke M, Brown TA, Bergmann C et al..  2025.  DELTA: a method for brain-wide measurement of synaptic protein turnover reveals localized plasticity during learning.. Nat Neurosci.
Tran L, Sharma S, Klein S, Jurgens D, Decarreau J, Liu B, Wang Y, Bera AK, Kang A, Woods J et al..  2025.  Design of Orthogonal Far-Red, Orange and Green Fluorophore-binding Proteins for Multiplex Imaging. bioRxiv.