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Project Teams:
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Gene Targeting and Transgenics
- High Performance Computing
- Immortalized Cell Line Culture
- Integrative Imaging
- Invertebrate Shared Resource
- Janelia Experimental Technology
- Mass Spectrometry
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- Molecular Genomics
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] 2019
Funke J, Tschopp FD, Grisaitis W, Sheridan A, Singh C, Saalfeld S, Turaga SC.
2019. Large scale image segmentation with structured loss based deep learning for connectome reconstruction.. IEEE Transactions on Pattern Analysis and Machine Intelligence. 41(7):1669-80.
2018
Plaza SM, Funke J.
2018. Analyzing image segmentation for connectomics.. Frontiers in Neural Circuits. 12:102.
Heinrich L, Funke J, Pape C, Nunez-Iglesias J, Saalfeld S.
2018. Synaptic cleft segmentation in non-isotropic volume electron microscopy of the complete Drosophila brain.. Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. :317-25.
Buhmann J, Krause R, Lentini RCeballos, Eckstein N, Cook M, Turaga SC, Funke J.
2018. Synaptic partner prediction from point annotations in insect brains.. MICCAI 2018: Medical Image Computing and Computer Assisted Intervention.
2017
Funke J, Zhang C, Pietzsch T, Ballester MAGonzalez, Saalfeld S.
2017. The candidate multi-cut for cell segmentation.. 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018).
Funke J, Klein J, Moreno-Noguer F, Cardona A, Cook M.
2017. TED: A Tolerant Edit Distance for segmentation evaluation.. Methods. 115:119-27.
2016
Tschopp F, Martel JNP, Turaga SC, Cook M, Funke J.
2016. Efficient convolutional neural networks for pixelwise classification on heterogeneous hardware systems.. IEEE 13th International Symposium on Biomedical Imaging: From Nano to Macro.
Funke J, Klein J, Moreno-Noguer F, Cardona A, Cook M.
2016. Structured learning of assignment models for neuron reconstruction to minimize topological errors.. IEEE 13th International Symposium on Biomedical Imaging (ISBI). :607-11.
2015
Kreshuk A, Funke J, Cardona A, Hamprecht FA.
2015. Who is talking to whom: Synaptic partner detection in anisotropic volumes of insect brain.. Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2015. :661-8.
2012
Funke J, Andres B, Hamprecht F, Cardona A, Cook M.
2012. Efficient automatic 3D-reconstruction of branching neurons from EM data.. Computer Vision and Pattern Recognition (CVPR), 2012 IEEE Conference on.