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2025
Stürner T, Brooks P, Capdevila LSerratosa, Morris BJ, Javier A, Fang S, Gkantia M, Cachero S, Beckett IR, Marin EC et al..  2025.  Comparative connectomics of Drosophila descending and ascending neurons.. Nature.
Deutsch D, Matsliah A, Wang K, Dorkenwald S, Mondal A, Burke A, Hebditch J, Gager J, Yu S-C, Sterling A et al..  2025.  Sexually-dimorphic neurons in the Drosophila whole-brain connectome. Research Square.
2024
Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu S-C, McKellar CE, Lin A, Costa M, Eichler K, Yin Y et al..  2024.  Neuronal wiring diagram of an adult brain.. Nature. 634(8032):124-138.
Popovych S, Macrina T, Kemnitz N, Castro M, Nehoran B, Jia Z, J Bae A, Mitchell E, Mu S, Trautman ET et al..  2024.  Petascale pipeline for precise alignment of images from serial section electron microscopy.. Nature Communications. 15(1):289.
2022
Buchanan JA, Elabbady L, Collman F, Jorstad NL, Bakken TE, Ott C, Glatzer J, Bleckert AA, Bodor AL, Brittain D et al..  2022.  Oligodendrocyte precursor cells ingest axons in the mouse neocortex.. Proceedings of the National Academies of Science of the U.S.A.. 119(48):e2202580119.
2020
Abbott LF, Bock DD, Callaway EM, Denk W, Dulac C, Fairhall AL, Fiete I, Harris KM, Helmstaedter M, Jain V et al..  2020.  The mind of a mouse.. Cell. 182(6):1372-1376.
2017
Arganda-Carreras I, Kaynig V, Rueden C, Eliceiri KW, Schindelin J, Cardona A, H Seung S.  2017.  Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification.. Bioinformatics (Oxford, England). 33(15):2424-6.
2015
Kim Y, Venkataraju KUmadevi, Pradhan K, Mende C, Taranda J, Turaga SC, Arganda-Carreras I, Ng L, Hawrylycz MJ, Rockland KS et al..  2015.  Mapping social behavior-induced brain activation at cellular resolution in the mouse.. Cell Reports. 10(2):292-305.
2014
Kim JS, Greene MJ, Zlateski A, Lee K, Richardson M, Turaga SC, Purcaro M, Balkam M, Robinson A, Behabadi BF et al..  2014.  Space-time wiring specificity supports direction selectivity in the retina.. Nature. 509(7500):331-6.
2013
Helmstaedter M, Briggman KL, Turaga SC, Jain V, H Seung S, Denk W.  2013.  Connectomic reconstruction of the inner plexiform layer in the mouse retina.. Nature. 500(7461):168-74.
2008
Jain V, H Seung S.  2008.  Natural image denoising with convolutional networks.. Neural Information Processing Systems.
2007
Jain V, Murray JF, Roth F, Turaga S, Zhigulin V, Briggman KL, Helmstaedter MN, Denk W, H Seung S.  2007.  Supervised learning of image restoration with convolutional networks.. IEEE 11th International Conference on Computer Vision. 2:1-8.