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Main Menu - Block
Labs:
Project Teams:
- Overview
- Anatomy and Histology
- Cryo-Electron Microscopy
- Electron Microscopy
- Flow Cytometry
- Gene Targeting and Transgenics
- Immortalized Cell Line Culture
- Integrative Imaging
- Invertebrate Shared Resource
- Janelia Experimental Technology
- Mass Spectrometry
- Media Prep
- Molecular Genomics
- Primary & iPS Cell Culture
- Project Pipeline Support
- Project Technical Resources
- Quantitative Genomics
- Scientific Computing Software
- Scientific Computing Systems
- Viral Tools
- Vivarium
Export 10 results:
Author Title Type [ Year
Filters: Author is Pachitariu, Marius and First Letter Of Title is C [Clear All Filters]
2025
Stringer C, Pachitariu M.
2025. Cellpose3: one-click image restoration for improved cellular segmentation.. Nat Methods.
Pachitariu M, Rariden M, Stringer C.
2025. Cellpose-SAM: superhuman generalization for cellular segmentation. bioRxiv.
Keller JA, Kwak IS, Stark AK, Pachitariu M, Branson K, Dudman JT.
2025. Cortical control of innate behavior from subcortical demonstration. bioRxiv.
Pachitariu M, Zhong L, Gracias A, Minisi A, Lopez C, Stringer C.
2025. A critical initialization for biological neural networks. bioRxiv.
2022
Pachitariu M, Stringer C.
2022. Cellpose 2.0: how to train your own model.. Nature Methods. 19(12):1634-41.
2021
Stringer C, Wang T, Michaelos M, Pachitariu M.
2021. Cellpose: a generalist algorithm for cellular segmentation.. Nature Methods. 18(1):100-106.
2020
2018
Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P et al..
2018. Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. PLOS Computational Biology. 14(5):e1006157.
Stringer C, Pachitariu M.
2018. Computational processing of neural recordings from calcium imaging data.. Current Opinion in Neurobiology. 55:22-31.
2017
Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P et al..
2017. Community-based benchmarking improves spike inference from two-photon calcium imaging data.. PLoS Computational Biology. 14(5):e1006157.