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Submitted
Baker BS.  Submitted.  Functional organization of the neural circuitry for male courtship behavior in Drosophila..
2025
Dalangin R, Jia BZ, Qi Y, Aggarwal A, Sakoi K, Drobizhev M, Molina RS, Patel R, Abdelfattah AS, Zheng J et al..  2025.  Far-red fluorescent genetically encoded calcium ion indicators.. Nat Commun. 16(1):3318.
Mi X, Chen ABo-Yuan, Duarte D, Carey E, Taylor CR, Braaker PN, Bright M, Almeida RG, Lim J-X, Ruetten VMS et al..  2025.  Fast, accurate, and versatile data analysis platform for the quantification of molecular spatiotemporal signals.. Cell.
Moore AS, Krug T, Hansen SB, Ludlow AV, Grimm JB, Ayala AX, Plutkis SE, Wang N, Goldman RD, Medalia O et al..  2025.  FilaBuster: A Strategy for Rapid, Specific, and Spatiotemporally Controlled Intermediate Filament Disassembly. bioRxiv.
Makarova AA, Chua NJ, Diakova AV, Desyatirkina IA, Gunn P, Pang S, C Xu S, Hess HF, Chklovskii DB, Polilov AA.  2025.  The first complete 3D reconstruction and morphofunctional mapping of an insect eye. eLife.
Makarova AA, Chua NJ, Diakova AV, Desyatirkina IA, Gunn P, Pang S, C Xu S, Hess H, Chklovskii DB, Polilov AA.  2025.  The first complete 3D reconstruction and morphofunctional mapping of an insect eye.
Alshaabi T, Milkie D, Liu G, Shirazinejad C, Hong J, Achour K, Görlitz F, Milunovic-Jevtic A, Simmons C, Abuzahriyeh I et al..  2025.  Fourier-Based 3D Multistage Transformer for Aberration Correction in Multicellular Specimens. Research Square.
2024
Ryvkin J, Omesi L, Kim Y-K, Levi M, Pozeilov H, Barak-Buchris L, Agranovich B, Abramovich I, Gottlieb E, Jacob A et al..  2024.  Failure to mate enhances investment in behaviors that may promote mating reward and impairs the ability to cope with stressors via a subpopulation of Neuropeptide F receptor neurons.. PLoS Genetics. 20(1):e1011054.
Wang H, Nikain C, Fortounas KI, Amengual J, Tufanli O, La Forest M, Yu Y, Wang MC, Watts R, Lehner R et al..  2024.  FITM2 deficiency results in ER lipid accumulation, ER stress, and reduced apolipoprotein B lipidation and VLDL triglyceride secretion in vitro and in mouse liver.. Mol Metab. :102048.
Dou Z, Liu R, Gui P, Fu C, Lippincott-Schwartz J, Yao X, Liu X.  2024.  Fluorescence complementation-based FRET imaging reveals centromere assembly dynamics.. Molecular Biology of the Cell. :mbcE23090379.
Li X, Gamuyao R, Wu M-L, Cho WJung, Kurtz NB, King SV, Petersen R.A., Stabley DR, Lindow C, Climer L et al..  2024.  A fluorogenic complementation tool kit for interrogating lipid droplet-organelle interaction. J. Cell Biol.. 223(9):e202311126.
Robie AA, Taylor AL, Schretter CE, Kabra M, Branson K.  2024.  The Fly Disco: Hardware and software for optogenetics and fine-grained fly behavior analysis. bioRxiv.
Kumari R, Ven K, Chastney M, Kokate SB, Peränen J, Aaron J, Kogan K, Almeida-Souza L, Kremneva E, Poincloux R et al..  2024.  Focal adhesions contain three specialized actin nanoscale layers. Nature Communications. 15(1)
Sinclair R, Wang M, Jawaid MZaki, Longkumer T, Aaron J, Rossetti B, Wait E, McDonald K, Cox D, Heddleston J et al..  2024.  Four-dimensional quantitative analysis of cell plate development using lattice light sheet microscopy identifies robust transition points between growth phases.. Journal of Experimental Botany.
Sinclair R, Wang M, Jawaid MZaki, Longkumer T, Aaron J, Rossetti B, Wait E, McDonald K, Cox D, Heddleston J et al..  2024.  Four-dimensional quantitative analysis of cell plate development in Arabidopsis using lattice light sheet microscopy identifies robust transition points between growth phases. J Exp Bot. 75(10):2829-2847.
Biswas T, Stanoev A, Romani S, Fitzgerald JE.  2024.  From the fly connectome to exact ring attractor dynamics. bioRxiv.
2023
Syeda A, Zhong L, Tung R, Long W, Pachitariu M, Stringer C.  2023.  Facemap: a framework for modeling neural activity based on orofacial tracking. Nature Neuroscience.
Zhang Y, Rozsa M, Liang Y, Bushey D, Wei Z, Zheng J, Reep D, Broussard GJoey, Tsang A, Tsegaye G et al..  2023.  Fast and sensitive GCaMP calcium indicators for imaging neural populations.. Nature.
Zhang Y, Looger LL.  2023.  Fast and sensitive GCaMP calcium indicators for neuronal imaging.. The Journal of Physiology.
Scheffer LK.  2023.  Finding the right type of cell.. eLife. 12
Cai C, Dong C, Friedrich J, Rozsa M, Pnevmatikakis EA, Giovannucci A.  2023.  FIOLA: an accelerated pipeline for fluorescence imaging online analysis.. Nature Methods. 20(9):1417-1425.
Modi MN, Rajagopalan A, Rouault H, Aso Y, Turner GC.  2023.  Flexible specificity of memory in Drosophila depends on a comparison between choices. eLife.
Pitsawong W, Pádua RAP, Grant T, Hoemberger M, Otten R, Bradshaw N, Grigorieff N, Kern D.  2023.  From primordial clocks to circadian oscillators. Nature.
Böhm C, Lee AK.  2023.  Functional specialization and structured representations for space and time in prefrontal cortex. bioRxiv.
Zhang Z, Feng Z, Zhao X, Jean D, Yu Z, Chapman ER.  2023.  Functionalization and higher-order organization of liposomes with DNA nanostructures.. Nature Communications. 14(1):5256.