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2024
Pachitariu M, Sridhar S, Pennington J, Stringer C.  2024.  Spike sorting with Kilosort4. Nat Methods.
Meissner GW, Vannan A, Jeter J, Close K, DePasquale GM, Dorman Z, Forster K, Beringer JAnne, Gibney TV, Hausenfluck JH et al..  2024.  A split-GAL4 driver line resource for Drosophila CNS cell types. bioRxiv.
Gilles JF, Mailly P, Ferreira T, Boudier T, Heck N.  2024.  Spot Spine, a freely available ImageJ plugin for 3D detection and morphological analysis of dendritic spines. F1000Research. 13
Blanc A, Laurent F, Barbier–Chebbah A, Cocanougher BT, Jones BMW, Hague P, Zlatic M, Chikhi R, Vestergaard CL, Jovanic T et al..  2024.  Statistical signature of subtle behavioural changes in large-scale behavioural assays. bioRxiv.
Jonaitis J, Hibbard KL, Layte KMcCafferty, Hiramoto A, Cardona A, Truman JW, Nose A, Zwart MF, Pulver SR.  2024.  Steering From the Rear: Coordination of Central Pattern Generators Underlying Navigation by Ascending Interneurons. bioRxiv.
J Rickgauer P, Choi H, Moore AS, Denk W, Lippincott-Schwartz J.  2024.  Structural dynamics of human ribosomes in situ reconstructed by exhaustive high-resolution template matching.. Mol Cell.
Müller A, Klena N, Pang S, Garcia LElizabeth, Sulaymankhil D, Topcheva O, Seliskar M, Mziaut H, Schöniger E, Friedland D et al..  2024.  Structure, interaction, and nervous connectivity of beta cell primary cilia. Nat Commun. 15(1):9168.
Amsalem O, Inagaki H, Yu J, Svoboda K, Darshan R.  2024.  Sub-threshold neuronal activity and the dynamical regime of cerebral cortex.. Nat Commun. 15(1):7958.
Bulumulla C, Walpita D, Iyer N, Eddison M, Patel R, Alcor D, Ackerman D, Beyene AG.  2024.  Synaptic Specializations at Dopamine Release Sites Orchestrate Efficient and Precise Neuromodulatory Signaling. bioRxiv.
2023
Miller AN, Houlihan PR, Matamala E, Cabezas-Bratesco D, Lee GYoung, Cristofori-Armstrong B, Dilan TL, Sanchez-Martinez S, Matthies D, Yan R et al..  2023.  The SARS-CoV-2 accessory protein Orf3a is not an ion channel, but does interact with trafficking proteins. eLife.
Arthur BJ, Kim CM, Chen S, Preibisch S, Darshan R.  2023.  A scalable implementation of the recursive least-squares algorithm for training spiking neural networks. Frontiers in Neuroinformatics.
Meissner GWilson, Nern A, Dorman Z, Depasquale GM, Forster K, Gibney T, Hausenfluck JH, He Y, Iyer NA, Jeter J et al..  2023.  A searchable image resource of Drosophila GAL4-driver expression patterns with single neuron resolution.. eLife. 12
Nichols AL, Blumenfeld Z, Luebbert L, Knox HJ, Muthusamy AK, Marvin JS, Kim CH, Grant SN, Walton DP, Cohen BN et al..  2023.  Selective Serotonin Reuptake Inhibitors within Cells: Temporal Resolution in Cytoplasm, Endoplasmic Reticulum, and Membrane.. Journal of Neuroscience.
Abdelfattah AS, Zheng J, Singh A, Huang Y-C, Reep D, Tsegaye G, Tsang A, Arthur BJ, Rehorova M, Olson CVL et al..  2023.  Sensitivity optimization of a rhodopsin-based fluorescent voltage indicator. Neuron. 111(10):1547-1563.
Schemenauer DE, Pool EH, Raynor SN, Ruiz GP, Goehring LM, Koelper AJ, Wilson MA, Durand AJ, Kourtoglou EC, Larsen EM et al..  2023.  Sequence and Structural Motifs Controlling the Broad Substrate Specificity of the Mycobacterial Hormone-Sensitive Lipase LipN. ACS Omega. 8(14):13252-13264.
Dora M, Obara CJ, Abel T, Lippincott-Schwarz J, Holcman D.  2023.  Simultaneous photoactivation and high-speed structural tracking reveal diffusion-dominated motion in the endoplasmic reticulum. bioRxiv.
Isaacson MD, Eliason JLM, Nern A, Rogers EM, Lott GK, Tabachnik T, Rowell WJ, Edwards AW, Korff WL, Rubin GM et al..  2023.  Small-field visual projection neurons detect translational optic flow and support walking control. bioRxiv.
Downie A.E, Oyesola O., Barre R.S, Caudron Q., Chen Y.-H., Dennis E.J, Garnier R., Kiwanuka K., Menezes A., Navarrete D.J et al..  2023.  Social association predicts immunological similarity in rewilded mice. bioRxiv.
Pachitariu M, Sridhar S, Stringer C.  2023.  Solving the spike sorting problem with Kilosort. bioRxiv.
Downie AE, Oyesola O, Barre RS, Caudron Q, Chen Y-H, Dennis EJ, Garnier R, Kiwanuka K, Menezes A, Navarrete DJ et al..  2023.  Spatiotemporal-social association predicts immunological similarity in rewilded mice.. Science Advances. 9(51):eadh8310.
Kumari R, Ven K, Chastney M, Peränen J, Aaron J, Almeida-Souza L, Kremneva E, Poincloux R, Chew T-L, Gunning PW et al..  2023.  Specialized actin nanoscale layers control focal adhesion turnover. bioRxiv.
Liang Y, Lu R, Borges K, Ji N.  2023.  Stimulus edges induce orientation tuning in superior colliculus.. Nature Communications. 14(1):4756.
Srinivasan S, Daste S, Modi M, Turner G, Fleischmann A, Navlakha S.  2023.  Stochastic coding: a conserved feature of odor representations and its implications for odor discrimination. bioRxiv.
Obara CJ, Moore AS, Lippincott-Schwartz J.  2023.  Structural Diversity within the Endoplasmic Reticulum-From the Microscale to the Nanoscale.. Cold Spring Harbor Perspectives in Biology. 15(6)
Nguyen TM, Thomas LA, Rhoades JL, Ricchi I, Yuan XCindy, Sheridan A, Hildebrand DGC, Funke J, Regehr WG, Lee W-CAllen.  2023.  Structured cerebellar connectivity supports resilient pattern separation.. Nature. 613(7944):543-549.