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2024
Sekiguchi R, Martin D, Doyle AD, Wang S, Yamada KM.  2024.  Salivary Gland Tissue Recombination Can Modify Cell Fate. J Dent Res. :220345241247484.
Takagi S, Sancer G, Abuin L, S. Stupski D, J. Arguello R, Prieto-Godino LL, Stern DL, Cruchet S, Álvarez-Ocaña R, Wienecke CFR et al..  2024.  Sensory neuron population expansion enhances odor tracking without sensitizing projection neurons. bioRxiv.
Holland KL, Plutkis SE, Daugird TA, Sau A, Grimm JB, English BP, Zheng Q, Dave S, Rahman F, Xie L et al..  2024.  A series of spontaneously blinking dyes for super-resolution microscopy. bioRxiv.
Shi Y, Tabet JS, Milkie DE, Daugird TA, Yang CQ, Giovannucci A, Legant WR.  2024.  Smart Lattice Light Sheet Microscopy for imaging rare and complex cellular events. Nature Methods. 21(2):301-310.
Schretter CE, Sten THindmarsh, Klapoetke N, Shao M, Nern A, Dreher M, Bushey D, Robie AA, Taylor AL, Branson KM et al..  2024.  Social state gates vision using three circuit mechanisms in Drosophila. bioRxiv.
Sawtelle S, Narayan L, Ding Y, Kim E, Behrman EL, Lillvis JL, Kawase T, Stern DL.  2024.  Song Torrent: A modular, open-source 96-chamber audio and video recording apparatus with optogenetic activation and inactivation capabilities for Drosophila. bioRxiv.
Pachitariu M, Sridhar S, Pennington J, Stringer C.  2024.  Spike sorting with Kilosort4. Nat Methods.
Meissner GW, Vannan A, Jeter J, Close K, DePasquale GM, Dorman Z, Forster K, Beringer JAnne, Gibney TV, Hausenfluck JH et al..  2024.  A split-GAL4 driver line resource for Drosophila CNS cell types. bioRxiv.
Gilles JF, Mailly P, Ferreira T, Boudier T, Heck N.  2024.  Spot Spine, a freely available ImageJ plugin for 3D detection and morphological analysis of dendritic spines. F1000Research. 13
Blanc A, Laurent F, Barbier–Chebbah A, Cocanougher BT, Jones BMW, Hague P, Zlatic M, Chikhi R, Vestergaard CL, Jovanic T et al..  2024.  Statistical signature of subtle behavioural changes in large-scale behavioural assays. bioRxiv.
Chai CM, Morrow C, Parikh DD, von Reyn CR, Leonardo A, Card GM.  2024.  A survival-critical role for Drosophila giant interneurons during predation. bioRxiv.
Lin B-J, Chen T-W, Chen E-L, Schreiter ER.  2024.  Synchronous Ensembles of Hippocampal CA1 Pyramidal Neurons Associated with Theta but not Ripple Oscillations During Novel Exploration.. bioRxiv.
2023
Miller AN, Houlihan PR, Matamala E, Cabezas-Bratesco D, Lee GYoung, Cristofori-Armstrong B, Dilan TL, Sanchez-Martinez S, Matthies D, Yan R et al..  2023.  The SARS-CoV-2 accessory protein Orf3a is not an ion channel, but does interact with trafficking proteins. eLife.
Arthur BJ, Kim CM, Chen S, Preibisch S, Darshan R.  2023.  A scalable implementation of the recursive least-squares algorithm for training spiking neural networks. Frontiers in Neuroinformatics.
Meissner GWilson, Nern A, Dorman Z, Depasquale GM, Forster K, Gibney T, Hausenfluck JH, He Y, Iyer NA, Jeter J et al..  2023.  A searchable image resource of Drosophila GAL4-driver expression patterns with single neuron resolution.. eLife. 12
Nichols AL, Blumenfeld Z, Luebbert L, Knox HJ, Muthusamy AK, Marvin JS, Kim CH, Grant SN, Walton DP, Cohen BN et al..  2023.  Selective Serotonin Reuptake Inhibitors within Cells: Temporal Resolution in Cytoplasm, Endoplasmic Reticulum, and Membrane.. Journal of Neuroscience.
Abdelfattah AS, Zheng J, Singh A, Huang Y-C, Reep D, Tsegaye G, Tsang A, Arthur BJ, Rehorova M, Olson CVL et al..  2023.  Sensitivity optimization of a rhodopsin-based fluorescent voltage indicator. Neuron. 111(10):1547-1563.
Takagi S, Abuin L, S. Stupski D, J. Arguello R, Prieto-Godino L, Stern DL, Cruchet S, Álvarez-Ocaña R, Wienecke CFR, van Breugel F et al..  2023.  Sensory neuron population expansion enhances odour tracking through relaxed projection neuron adaptation. bioRxiv.
Schemenauer DE, Pool EH, Raynor SN, Ruiz GP, Goehring LM, Koelper AJ, Wilson MA, Durand AJ, Kourtoglou EC, Larsen EM et al..  2023.  Sequence and Structural Motifs Controlling the Broad Substrate Specificity of the Mycobacterial Hormone-Sensitive Lipase LipN. ACS Omega. 8(14):13252-13264.
Dora M, Obara CJ, Abel T, Lippincott-Schwarz J, Holcman D.  2023.  Simultaneous photoactivation and high-speed structural tracking reveal diffusion-dominated motion in the endoplasmic reticulum. bioRxiv.
Ehrhardt E, Whitehead SC, Namiki S, Minegishi R, Siwanowicz I, Feng K, Otsuna H, Team FLProject, Meissner GW, Stern D et al..  2023.  Single-cell type analysis of wing premotor circuits in the ventral nerve cord of Drosophila melanogaster. bioRxiv.
Isaacson MD, Eliason JLM, Nern A, Rogers EM, Lott GK, Tabachnik T, Rowell WJ, Edwards AW, Korff WL, Rubin GM et al..  2023.  Small-field visual projection neurons detect translational optic flow and support walking control. bioRxiv.
Downie A.E, Oyesola O., Barre R.S, Caudron Q., Chen Y.-H., Dennis E.J, Garnier R., Kiwanuka K., Menezes A., Navarrete D.J et al..  2023.  Social association predicts immunological similarity in rewilded mice. bioRxiv.
Pachitariu M, Sridhar S, Stringer C.  2023.  Solving the spike sorting problem with Kilosort. bioRxiv.
Downie AE, Oyesola O, Barre RS, Caudron Q, Chen Y-H, Dennis EJ, Garnier R, Kiwanuka K, Menezes A, Navarrete DJ et al..  2023.  Spatiotemporal-social association predicts immunological similarity in rewilded mice.. Science Advances. 9(51):eadh8310.